Wall clock time and date at job start Mon Mar 30 2020 02:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48498 * 109.46870 * 239.99911 * 3 2 1 5 5 H 1.48503 * 109.46842 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47417 * 119.99790 * 3 2 1 7 7 C 1.37875 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00108 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00283 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47449 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47029 * 174.84835 * 10 9 7 12 12 C 1.47974 * 110.99902 * 161.76911 * 11 10 9 13 13 C 1.53584 * 86.14084 * 221.75278 * 12 11 10 14 14 H 1.09001 * 115.41939 * 267.23455 * 13 12 11 15 15 C 1.53268 * 114.49773 * 130.37814 * 13 12 11 16 16 C 1.53481 * 107.50652 * 282.63504 * 15 13 12 17 17 C 1.53536 * 107.22321 * 0.97821 * 16 15 13 18 18 C 1.48185 * 111.00175 * 62.34674 * 11 10 9 19 19 H 1.09001 * 116.58584 * 256.42630 * 18 11 10 20 20 H 0.96996 * 119.99874 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.46935 * 59.99342 * 9 7 2 22 22 H 1.09001 * 109.46682 * 299.99906 * 9 7 2 23 23 H 1.08999 * 109.47441 * 54.84576 * 10 9 7 24 24 H 1.08998 * 109.47076 * 294.84059 * 10 9 7 25 25 H 1.08997 * 113.76718 * 107.44377 * 12 11 10 26 26 H 1.08998 * 113.86572 * 336.07291 * 12 11 10 27 27 H 1.08996 * 109.84713 * 42.12510 * 15 13 12 28 28 H 1.09006 * 109.84097 * 163.14932 * 15 13 12 29 29 H 1.09003 * 109.88940 * 241.57806 * 16 15 13 30 30 H 1.08998 * 110.02639 * 120.46039 * 16 15 13 31 31 H 1.08993 * 110.10798 * 223.11496 * 17 16 15 32 32 H 1.09004 * 110.15392 * 101.52230 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5151 -4.9306 0.1249 12 6 2.3570 -6.0709 -0.2999 13 6 1.0976 -6.6072 -0.9963 14 1 0.4927 -7.2946 -0.4050 15 6 1.3070 -7.0228 -2.4566 16 6 1.3494 -5.7411 -3.2999 17 6 1.1895 -4.5570 -2.3357 18 6 0.6121 -5.1391 -1.0314 19 1 -0.4494 -4.9610 -0.8596 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5570 -0.8897 22 1 0.6242 -2.5567 0.8903 23 1 2.9313 -3.5537 0.8407 24 1 2.8096 -3.6576 -0.9320 25 1 2.7016 -6.6940 0.5254 26 1 3.1564 -5.7966 -0.9882 27 1 2.2486 -7.5626 -2.5563 28 1 0.4806 -7.6539 -2.7839 29 1 0.5324 -5.7448 -4.0215 30 1 2.3040 -5.6687 -3.8211 31 1 0.5018 -3.8227 -2.7550 32 1 2.1582 -4.0957 -2.1436 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335529126.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:47 Heat of formation + Delta-G solvation = 25.921370 kcal Electronic energy + Delta-G solvation = -12638.805638 eV Core-core repulsion = 10599.891756 eV Total energy + Delta-G solvation = -2038.913882 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.73675 -34.28044 -32.94126 -30.87249 -28.32698 -26.37174 -24.63154 -23.27264 -21.03719 -19.31558 -17.87977 -16.48193 -16.15621 -15.28382 -14.47054 -14.35627 -13.85133 -13.01360 -12.61946 -12.20816 -12.03151 -11.77184 -11.14472 -10.93351 -10.88009 -10.75432 -10.56320 -10.24639 -10.01754 -9.95082 -9.79345 -9.22454 -9.07124 -8.33213 -8.03042 -5.97345 -3.99726 3.34299 3.38602 3.41039 4.35870 4.50125 4.64189 4.85340 5.25579 5.38307 5.44218 5.55580 5.62148 5.72336 5.81082 5.90029 6.01960 6.06916 6.14746 6.21827 6.27693 6.32109 6.54447 6.60336 6.83125 6.94274 7.21575 7.56085 7.75589 7.93403 8.10027 8.45710 9.07180 9.63600 11.13942 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.063065 B = 0.008569 C = 0.008294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.878018 B = 3266.679945 C = 3375.294721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.027 3.973 10 C 0.020 3.980 11 N -0.475 5.475 12 C 0.005 3.995 13 C -0.123 4.123 14 H 0.097 0.903 15 C -0.114 4.114 16 C -0.119 4.119 17 C -0.147 4.147 18 C 0.041 3.959 19 H 0.102 0.898 20 H 0.261 0.739 21 H 0.020 0.980 22 H 0.022 0.978 23 H 0.061 0.939 24 H 0.037 0.963 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 -11.761 -4.800 12.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.010 4.010 10 C -0.107 4.107 11 N -0.196 5.196 12 C -0.124 4.124 13 C -0.142 4.142 14 H 0.115 0.885 15 C -0.152 4.152 16 C -0.157 4.157 17 C -0.185 4.185 18 C -0.068 4.068 19 H 0.120 0.880 20 H 0.070 0.930 21 H 0.038 0.962 22 H 0.040 0.960 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.156 -11.591 -4.118 12.488 hybrid contribution 0.851 1.147 -0.767 1.621 sum 3.007 -10.444 -4.884 11.915 Atomic orbital electron populations 1.69963 1.06003 1.26626 1.50679 1.24993 0.94830 0.99127 0.95355 0.86669 0.79589 0.83226 0.78572 1.20327 1.21266 1.20242 1.21163 0.92897 0.91115 1.50849 0.92910 1.19077 0.93910 0.90222 0.97810 1.22925 0.98195 0.90619 0.99003 1.68785 1.11663 1.03061 1.36136 1.23797 0.95157 0.95054 0.98386 1.23525 0.97904 0.97183 0.95558 0.88473 1.21830 1.01248 0.97571 0.94564 1.21962 1.01238 0.94430 0.98106 1.22569 1.03267 0.97744 0.94919 1.23981 0.98993 0.93673 0.90172 0.87965 0.92981 0.96171 0.96001 0.92029 0.94555 0.90348 0.91843 0.92073 0.92015 0.92103 0.92273 0.90933 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.72 4.74 -27.89 -0.13 0.59 16 10 C 0.02 0.44 4.59 -3.82 -0.02 0.42 16 11 N -0.47 -9.18 6.32 -230.32 -1.45 -10.64 16 12 C 0.01 0.08 7.16 -2.94 -0.02 0.06 16 13 C -0.12 -1.74 4.96 -89.36 -0.44 -2.18 16 14 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.11 -1.38 6.31 -26.34 -0.17 -1.55 16 16 C -0.12 -1.58 6.77 -26.20 -0.18 -1.75 16 17 C -0.15 -2.47 4.54 -25.90 -0.12 -2.59 16 18 C 0.04 0.72 4.56 -65.58 -0.30 0.42 16 19 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.02 0.55 6.44 -51.92 -0.33 0.22 16 22 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 24 H 0.04 0.77 5.04 -51.93 -0.26 0.51 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 0.96 7.23 -51.93 -0.38 0.59 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.30 7.95 -51.93 -0.41 0.89 16 32 H 0.09 1.59 4.67 -51.93 -0.24 1.34 16 LS Contribution 249.32 15.07 3.76 3.76 Total: -1.00 -30.17 249.32 -8.74 -38.91 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.97 Total: -2.12 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -1.79 Total: -20.34 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: -0.72 Total: -37.14 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.17 -8.74 -38.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335529126.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.836 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds