Wall clock time and date at job start Mon Mar 30 2020 02:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99964 * 2 1 4 4 H 1.48498 * 109.46870 * 239.99911 * 3 2 1 5 5 H 1.48503 * 109.46842 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47417 * 119.99790 * 3 2 1 7 7 C 1.37875 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00108 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00283 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47449 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47029 * 174.84835 * 10 9 7 12 12 C 1.47974 * 110.99902 * 161.76911 * 11 10 9 13 13 C 1.53584 * 86.14084 * 221.75278 * 12 11 10 14 14 H 1.09001 * 115.41939 * 267.23455 * 13 12 11 15 15 C 1.53268 * 114.49773 * 130.37814 * 13 12 11 16 16 C 1.53481 * 107.50652 * 282.63504 * 15 13 12 17 17 C 1.53536 * 107.22321 * 0.97821 * 16 15 13 18 18 C 1.48185 * 111.00175 * 62.34674 * 11 10 9 19 19 H 1.09001 * 116.58584 * 256.42630 * 18 11 10 20 20 H 0.96996 * 119.99874 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.46935 * 59.99342 * 9 7 2 22 22 H 1.09001 * 109.46682 * 299.99906 * 9 7 2 23 23 H 1.08999 * 109.47441 * 54.84576 * 10 9 7 24 24 H 1.08998 * 109.47076 * 294.84059 * 10 9 7 25 25 H 1.08997 * 113.76718 * 107.44377 * 12 11 10 26 26 H 1.08998 * 113.86572 * 336.07291 * 12 11 10 27 27 H 1.08996 * 109.84713 * 42.12510 * 15 13 12 28 28 H 1.09006 * 109.84097 * 163.14932 * 15 13 12 29 29 H 1.09003 * 109.88940 * 241.57806 * 16 15 13 30 30 H 1.08998 * 110.02639 * 120.46039 * 16 15 13 31 31 H 1.08993 * 110.10798 * 223.11496 * 17 16 15 32 32 H 1.09004 * 110.15392 * 101.52230 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5151 -4.9306 0.1249 12 6 2.3570 -6.0709 -0.2999 13 6 1.0976 -6.6072 -0.9963 14 1 0.4927 -7.2946 -0.4050 15 6 1.3070 -7.0228 -2.4566 16 6 1.3494 -5.7411 -3.2999 17 6 1.1895 -4.5570 -2.3357 18 6 0.6121 -5.1391 -1.0314 19 1 -0.4494 -4.9610 -0.8596 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5570 -0.8897 22 1 0.6242 -2.5567 0.8903 23 1 2.9313 -3.5537 0.8407 24 1 2.8096 -3.6576 -0.9320 25 1 2.7016 -6.6940 0.5254 26 1 3.1564 -5.7966 -0.9882 27 1 2.2486 -7.5626 -2.5563 28 1 0.4806 -7.6539 -2.7839 29 1 0.5324 -5.7448 -4.0215 30 1 2.3040 -5.6687 -3.8211 31 1 0.5018 -3.8227 -2.7550 32 1 2.1582 -4.0957 -2.1436 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335529126.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:46 Heat of formation + Delta-G solvation = 5.574594 kcal Electronic energy + Delta-G solvation = -12639.687941 eV Core-core repulsion = 10599.891756 eV Total energy + Delta-G solvation = -2039.796185 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.08006 -35.98156 -34.71848 -32.63507 -29.82206 -27.98034 -26.13962 -24.91157 -22.77584 -20.62263 -19.24395 -18.54065 -17.62625 -16.72642 -16.41097 -15.80915 -15.27253 -14.51569 -14.14433 -13.83803 -13.76416 -13.32595 -12.91079 -12.77803 -12.43616 -12.11835 -11.93121 -11.81976 -11.60635 -11.47525 -11.23058 -11.10473 -10.91576 -10.57207 -9.54047 -8.21933 -6.33913 1.37472 1.41150 1.49109 2.38425 3.06455 3.11153 3.42389 3.67432 4.03711 4.21959 4.26491 4.38704 4.39716 4.51374 4.65812 4.68382 4.76004 4.86573 4.98852 5.08352 5.10714 5.22134 5.26097 5.40604 5.45512 5.49381 5.56825 5.70893 5.82162 6.15679 6.32225 6.82617 7.35065 8.89914 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.063065 B = 0.008569 C = 0.008294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.878018 B = 3266.679945 C = 3375.294721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.038 3.962 10 C 0.037 3.963 11 N -0.500 5.500 12 C 0.008 3.992 13 C -0.101 4.101 14 H 0.112 0.888 15 C -0.107 4.107 16 C -0.114 4.114 17 C -0.144 4.144 18 C 0.022 3.978 19 H 0.083 0.917 20 H 0.264 0.736 21 H 0.000 1.000 22 H -0.018 1.018 23 H 0.054 0.946 24 H 0.045 0.955 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.906 -12.865 -5.611 14.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.091 4.091 11 N -0.222 5.222 12 C -0.121 4.121 13 C -0.120 4.120 14 H 0.130 0.870 15 C -0.144 4.144 16 C -0.151 4.151 17 C -0.183 4.183 18 C -0.087 4.087 19 H 0.101 0.899 20 H 0.073 0.927 21 H 0.019 0.981 22 H 0.000 1.000 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.508 -12.715 -4.931 14.082 hybrid contribution 0.375 1.481 -0.491 1.604 sum 3.883 -11.235 -5.422 13.065 Atomic orbital electron populations 1.70110 1.07851 1.27842 1.51344 1.25989 0.95778 1.03382 0.94567 0.85478 0.78276 0.77936 0.79224 1.19010 1.20659 1.19203 1.21599 0.93445 0.92341 1.51074 0.92288 1.18869 0.94087 0.92113 0.94839 1.22592 0.96837 0.90615 0.99092 1.68749 1.12936 1.02746 1.37745 1.23904 0.95561 0.93291 0.99295 1.23466 0.96405 0.94820 0.97322 0.87038 1.21818 1.03281 0.97108 0.92236 1.21951 1.02431 0.93175 0.97581 1.22486 1.01287 0.98865 0.95642 1.24096 0.97848 0.96957 0.89822 0.89860 0.92748 0.98146 0.99967 0.92739 0.93703 0.88602 0.91200 0.89944 0.89945 0.90988 0.90998 0.93385 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.31 13.29 21.45 0.28 -58.02 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 45.20 29.54 68.60 2.03 47.23 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.55 -32.25 9.11 25.60 0.23 -32.02 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 9 C 0.04 2.14 4.74 29.85 0.14 2.28 16 10 C 0.04 1.64 4.59 86.30 0.40 2.04 16 11 N -0.50 -19.41 6.32 -882.61 -5.58 -24.98 16 12 C 0.01 0.23 7.16 86.29 0.62 0.85 16 13 C -0.10 -2.62 4.96 -9.92 -0.05 -2.67 16 14 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 15 C -0.11 -2.17 6.31 30.85 0.19 -1.98 16 16 C -0.11 -2.73 6.77 30.94 0.21 -2.52 16 17 C -0.14 -4.89 4.54 31.13 0.14 -4.75 16 18 C 0.02 0.78 4.56 45.59 0.21 0.99 16 19 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 20 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 21 H 0.00 0.01 6.44 -2.38 -0.02 0.00 16 22 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 23 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 24 H 0.05 1.93 5.04 -2.39 -0.01 1.92 16 25 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.07 1.95 7.23 -2.39 -0.02 1.93 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.80 7.95 -2.39 -0.02 1.78 16 32 H 0.07 2.50 4.67 -2.39 -0.01 2.49 16 Total: -1.00 -66.48 249.32 0.37 -66.11 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: 1.08 Total: 6.94 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 2.56 Total: -37.28 kcal Atomic # 7 Polarization: -77.72 SS G_CDS: -5.29 Total: -83.01 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -66.48 0.37 -66.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335529126.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.685 kcal (2) G-P(sol) polarization free energy of solvation -66.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds