Wall clock time and date at job start Mon Mar 30 2020 02:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00440 * 2 1 4 4 H 1.48493 * 109.47165 * 270.00066 * 3 2 1 5 5 H 1.48500 * 109.46801 * 29.99781 * 3 2 1 6 6 H 1.48498 * 109.47427 * 149.99581 * 3 2 1 7 7 C 1.37876 * 119.99700 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99904 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00243 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47406 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47102 * 176.30708 * 10 9 7 12 12 C 1.50991 * 110.99909 * 174.50440 * 11 10 9 13 13 C 1.50001 * 80.44703 * 204.27860 * 12 11 10 14 14 H 1.08996 * 114.12522 * 288.36709 * 13 12 11 15 15 C 1.51808 * 128.97217 * 132.05241 * 13 12 11 16 16 C 1.56201 * 101.53356 * 227.94736 * 15 13 12 17 17 C 1.55752 * 104.77862 * 26.33418 * 16 15 13 18 18 C 1.42939 * 111.03593 * 82.30444 * 11 10 9 19 19 H 1.08997 * 111.22074 * 41.23134 * 18 11 10 20 20 H 0.97001 * 119.99576 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47423 * 59.99498 * 9 7 2 22 22 H 1.09005 * 109.46732 * 299.99592 * 9 7 2 23 23 H 1.09002 * 109.46513 * 56.31200 * 10 9 7 24 24 H 1.08992 * 109.47198 * 296.30861 * 10 9 7 25 25 H 1.09006 * 114.70415 * 91.38658 * 12 11 10 26 26 H 1.08995 * 114.70564 * 317.17555 * 12 11 10 27 27 H 1.09004 * 111.01200 * 346.00591 * 15 13 12 28 28 H 1.08994 * 111.01666 * 109.87910 * 15 13 12 29 29 H 1.09002 * 110.37457 * 267.51065 * 16 15 13 30 30 H 1.09001 * 110.37601 * 145.16018 * 16 15 13 31 31 H 1.09002 * 110.46481 * 249.98514 * 17 16 15 32 32 H 1.08998 * 110.57703 * 127.45430 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5128 -4.9324 0.0897 12 6 2.4508 -6.1082 -0.0422 13 6 1.1744 -6.7564 -0.4904 14 1 0.4562 -6.9275 0.3113 15 6 0.9201 -7.6197 -1.7130 16 6 -0.3755 -6.9671 -2.2921 17 6 -0.3295 -5.4896 -1.8015 18 6 1.0376 -5.3420 -1.1946 19 1 1.7869 -5.1672 -1.9667 20 1 -0.4849 0.8401 -0.0004 21 1 0.6245 -2.5571 -0.8896 22 1 0.6240 -2.5567 0.8904 23 1 2.9145 -3.5678 0.8557 24 1 2.8274 -3.6424 -0.9206 25 1 2.8456 -6.4842 0.9017 26 1 3.2062 -6.0032 -0.8209 27 1 1.7450 -7.5464 -2.4217 28 1 0.7420 -8.6568 -1.4290 29 1 -1.2606 -7.4693 -1.9015 30 1 -0.3657 -7.0058 -3.3813 31 1 -1.1005 -5.3129 -1.0514 32 1 -0.4505 -4.8036 -2.6398 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335529127.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:49 Heat of formation + Delta-G solvation = 45.384444 kcal Electronic energy + Delta-G solvation = -12409.779323 eV Core-core repulsion = 10371.709423 eV Total energy + Delta-G solvation = -2038.069900 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.52536 -36.46514 -35.13270 -32.57014 -29.76594 -27.95011 -25.43906 -24.82763 -22.55025 -21.30684 -20.26057 -18.55433 -16.62535 -16.36958 -16.04028 -15.91783 -15.42462 -14.86906 -14.62837 -14.12666 -13.44507 -13.18263 -12.90410 -12.56685 -12.42507 -12.31106 -11.99110 -11.86285 -11.69982 -11.40752 -11.34105 -11.20559 -10.61414 -10.16676 -9.83450 -8.24314 -6.37671 1.36435 1.39101 1.50438 2.35764 2.50798 3.08087 3.35432 3.79163 3.97807 4.08834 4.26560 4.33765 4.40544 4.45499 4.52573 4.72977 4.75183 4.87521 4.94350 5.00847 5.09431 5.15706 5.21939 5.36849 5.38882 5.50983 5.55870 5.62188 5.78297 6.09239 6.25325 6.79141 7.32005 8.87933 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.066310 B = 0.007825 C = 0.007294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.157729 B = 3577.401292 C = 3837.996278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.549 4.549 8 H 0.061 0.939 9 C 0.043 3.957 10 C 0.029 3.971 11 N -0.467 5.467 12 C 0.016 3.984 13 C -0.111 4.111 14 H 0.101 0.899 15 C -0.098 4.098 16 C -0.106 4.106 17 C -0.105 4.105 18 C -0.031 4.031 19 H 0.061 0.939 20 H 0.265 0.735 21 H -0.017 1.017 22 H -0.015 1.015 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.017 -14.508 -4.008 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.006 3.994 10 C -0.099 4.099 11 N -0.190 5.190 12 C -0.111 4.111 13 C -0.130 4.130 14 H 0.119 0.881 15 C -0.136 4.136 16 C -0.144 4.144 17 C -0.143 4.143 18 C -0.141 4.141 19 H 0.079 0.921 20 H 0.073 0.927 21 H 0.001 0.999 22 H 0.004 0.996 23 H 0.079 0.921 24 H 0.048 0.952 25 H 0.119 0.881 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.413 -14.257 -3.412 14.857 hybrid contribution 0.542 1.574 -0.547 1.752 sum 2.955 -12.683 -3.958 13.611 Atomic orbital electron populations 1.70130 1.08003 1.27896 1.51250 1.26059 0.95822 1.03631 0.94392 0.85354 0.78614 0.77873 0.78637 1.19534 1.20466 1.18557 1.21652 0.93535 0.92290 1.51252 0.92086 1.18753 0.94017 0.92422 0.94218 1.22653 0.96507 0.91715 0.99030 1.69971 1.21347 1.01203 1.26440 1.23842 0.93826 0.91088 1.02314 1.23579 0.97954 0.93417 0.98035 0.88131 1.21929 0.97661 0.98983 0.95040 1.22919 0.98646 0.91729 1.01146 1.21527 0.95171 0.98510 0.99121 1.23727 0.98798 0.99804 0.91797 0.92123 0.92670 0.99895 0.99618 0.92111 0.95183 0.88099 0.89764 0.90687 0.89364 0.90129 0.90118 0.93042 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.31 13.29 21.45 0.28 -59.03 16 2 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 3 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -33.07 9.11 25.60 0.23 -32.83 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.04 2.50 5.13 29.85 0.15 2.66 16 10 C 0.03 1.32 4.85 86.30 0.42 1.74 16 11 N -0.47 -18.30 6.07 ******* -7.50 -25.81 16 12 C 0.02 0.46 7.72 73.90 0.57 1.03 16 13 C -0.11 -2.91 4.38 -8.50 -0.04 -2.95 16 14 H 0.10 2.83 8.11 -2.39 -0.02 2.81 16 15 C -0.10 -1.93 6.67 31.31 0.21 -1.72 16 16 C -0.11 -2.28 6.99 32.66 0.23 -2.06 16 17 C -0.10 -3.32 6.62 30.67 0.20 -3.12 16 18 C -0.03 -1.08 3.50 36.15 0.13 -0.95 16 19 H 0.06 2.10 7.02 -2.39 -0.02 2.09 16 20 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 21 H -0.02 -1.09 8.02 -2.39 -0.02 -1.11 16 22 H -0.01 -0.93 8.14 -2.38 -0.02 -0.95 16 23 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 24 H 0.03 1.33 7.56 -2.39 -0.02 1.31 16 25 H 0.10 2.50 8.14 -2.38 -0.02 2.48 16 26 H 0.08 2.17 7.63 -2.39 -0.02 2.15 16 27 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -68.97 258.34 -1.56 -70.54 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: 1.06 Total: 4.48 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 2.57 Total: -37.81 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -7.22 Total: -84.83 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -68.97 -1.56 -70.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335529127.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.921 kcal (2) G-P(sol) polarization free energy of solvation -68.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds