Wall clock time and date at job start Mon Mar 30 2020 02:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47422 * 2 1 4 4 N 1.46908 * 109.47228 * 119.99514 * 2 1 3 5 5 C 1.46894 * 110.99878 * 275.00233 * 4 2 1 6 6 C 1.50704 * 109.46583 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99971 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99980 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00001 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00215 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47315 * 59.99634 * 10 8 6 12 12 H 1.48498 * 109.47256 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46814 * 299.99622 * 10 8 6 14 14 C 1.50699 * 109.47186 * 239.99652 * 2 1 3 15 15 C 1.39870 * 126.04151 * 280.02697 * 14 2 1 16 16 N 1.30839 * 108.19862 * 179.97438 * 15 14 2 17 17 N 1.40079 * 108.20849 * 359.97438 * 16 15 14 18 18 H 0.96997 * 126.03520 * 179.97438 * 17 16 15 19 19 C 1.34948 * 107.92564 * 0.02562 * 17 16 15 20 20 H 1.09001 * 109.47067 * 59.99909 * 1 2 3 21 21 H 1.08998 * 109.46966 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47091 * 300.00424 * 1 2 3 23 23 H 1.00903 * 110.99454 * 151.04741 * 4 2 1 24 24 H 1.08999 * 109.47391 * 299.99354 * 5 4 2 25 25 H 1.08992 * 109.47603 * 60.00019 * 5 4 2 26 26 H 0.96996 * 120.00169 * 180.02562 * 9 8 6 27 27 H 1.07997 * 125.89701 * 0.02562 * 15 14 2 28 28 H 1.08007 * 126.12251 * 180.26869 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5873 -0.5217 3.5560 7 1 2.8362 -1.5699 3.4798 8 6 2.7305 0.1351 4.7598 9 7 2.4269 1.4114 4.8527 10 14 3.3570 -0.7873 6.2585 11 1 4.7134 -1.3232 5.9786 12 1 3.4203 0.1377 7.4184 13 1 2.4358 -1.9098 6.5696 14 6 2.0323 -0.7105 -1.2304 15 6 2.1210 -2.0957 -1.4023 16 7 2.6014 -2.3294 -2.5966 17 7 2.8334 -1.0985 -3.2236 18 1 3.1888 -0.9712 -4.1171 19 6 2.4764 -0.1209 -2.3645 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 2.9173 -1.1204 1.0288 24 1 2.7588 1.0463 2.1182 25 1 1.0871 0.6164 2.5525 26 1 2.5279 1.8736 5.6995 27 1 1.8404 -2.8433 -0.6750 28 1 2.5307 0.9416 -2.5508 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379335768.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:12 Heat of formation + Delta-G solvation = 67.388649 kcal Electronic energy + Delta-G solvation = -11824.851556 eV Core-core repulsion = 9684.195487 eV Total energy + Delta-G solvation = -2140.656069 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.98085 -36.00889 -32.81950 -31.16112 -30.43813 -28.24159 -26.04932 -22.75479 -21.77565 -20.86051 -19.52039 -17.53257 -16.19587 -14.71606 -14.55822 -14.41963 -14.20214 -13.74348 -12.89313 -12.50209 -12.24796 -11.62349 -11.38535 -11.31129 -10.99551 -10.71024 -10.61650 -10.09578 -9.81459 -9.44720 -9.15281 -8.43281 -8.26954 -7.22119 -5.98809 -4.00159 2.05202 3.03609 3.05660 3.37036 3.40515 3.44042 4.47096 4.95817 5.07933 5.34009 5.37533 5.71856 5.83050 5.91638 6.09349 6.19678 6.47522 6.61064 6.80087 6.91060 7.33836 7.39450 7.49198 7.80615 7.87132 8.20044 8.49795 8.69413 9.09462 9.64524 11.12344 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.061211 B = 0.007506 C = 0.007114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.322328 B = 3729.222136 C = 3934.768838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.156 3.844 3 H 0.038 0.962 4 N -0.682 5.682 5 C 0.194 3.806 6 C -0.512 4.512 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.276 1.276 14 C -0.223 4.223 15 C 0.073 3.927 16 N -0.308 5.308 17 N -0.486 5.486 18 H 0.434 0.566 19 C 0.050 3.950 20 H 0.041 0.959 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.330 0.670 24 H -0.015 1.015 25 H 0.029 0.971 26 H 0.261 0.739 27 H 0.187 0.813 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 -1.622 -13.012 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.044 3.956 3 H 0.056 0.944 4 N -0.313 5.313 5 C 0.067 3.933 6 C -0.551 4.551 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.234 4.234 15 C -0.113 4.113 16 N -0.130 5.130 17 N -0.194 5.194 18 H 0.277 0.723 19 C -0.097 4.097 20 H 0.060 0.940 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.147 0.853 24 H 0.003 0.997 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.204 0.796 28 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.846 -2.604 -13.514 13.789 hybrid contribution 1.060 0.975 0.794 1.644 sum 0.214 -1.629 -12.720 12.826 Atomic orbital electron populations 1.21719 0.94909 1.01742 1.00302 1.19740 0.94985 0.94356 0.86488 0.94440 1.60756 1.32528 1.34572 1.03442 1.19592 0.96466 0.90214 0.86990 1.21170 1.43176 0.96717 0.94045 0.92016 1.24980 0.95728 0.94889 0.98971 1.69952 1.49006 1.09004 1.25937 0.86557 0.79349 0.79496 0.81960 1.20321 1.21427 1.20154 1.20444 1.11376 0.93746 0.97879 1.23856 0.97186 0.96449 0.93846 1.77290 1.23010 1.03191 1.09514 1.46231 1.53257 1.04088 1.15825 0.72270 1.22357 1.00686 0.95288 0.91378 0.93960 0.92491 0.92395 0.85302 0.99736 0.95259 0.92931 0.79595 0.81066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.40 37.15 0.35 -1.79 15 2 C 0.16 2.77 3.05 -68.86 -0.21 2.56 15 3 H 0.04 0.69 7.79 -51.93 -0.40 0.29 15 4 N -0.68 -14.53 6.09 -109.22 -0.67 -15.20 15 5 C 0.19 5.07 5.24 -4.98 -0.03 5.05 15 6 C -0.51 -14.56 9.32 -34.44 -0.32 -14.88 15 7 H 0.06 1.72 7.81 -52.49 -0.41 1.31 15 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 9 N -0.90 -26.96 13.29 55.43 0.74 -26.22 15 10 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 15 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 13 H -0.28 -6.62 7.11 56.52 0.40 -6.21 15 14 C -0.22 -3.43 4.81 -105.05 -0.51 -3.94 15 15 C 0.07 1.14 11.46 -17.36 -0.20 0.94 15 16 N -0.31 -4.64 12.70 30.62 0.39 -4.25 15 17 N -0.49 -5.82 7.36 30.45 0.22 -5.60 15 18 H 0.43 3.57 8.96 -182.62 -1.64 1.93 15 19 C 0.05 0.63 11.90 -17.22 -0.20 0.43 15 20 H 0.04 0.60 8.14 -51.93 -0.42 0.17 15 21 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 22 H 0.06 1.05 7.45 -51.93 -0.39 0.66 15 23 H 0.33 6.93 8.14 -39.29 -0.32 6.61 15 24 H -0.02 -0.42 8.06 -51.93 -0.42 -0.84 15 25 H 0.03 0.82 7.44 -51.93 -0.39 0.43 15 26 H 0.26 7.40 8.31 -40.82 -0.34 7.07 15 27 H 0.19 2.74 8.06 -52.49 -0.42 2.32 15 28 H 0.17 1.60 8.06 -52.48 -0.42 1.17 15 LS Contribution 247.29 15.07 3.73 3.73 Total: -1.00 -31.60 247.29 -6.61 -38.21 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -4.79 Total: 2.67 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.21 Total: -10.14 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.68 Total: -51.27 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.60 -6.61 -38.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379335768.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.599 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds