Wall clock time and date at job start Mon Mar 30 2020 02:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47422 * 2 1 4 4 N 1.46908 * 109.47228 * 119.99514 * 2 1 3 5 5 C 1.46894 * 110.99878 * 275.00233 * 4 2 1 6 6 C 1.50704 * 109.46583 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99971 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99980 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00001 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00215 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47315 * 59.99634 * 10 8 6 12 12 H 1.48498 * 109.47256 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.46814 * 299.99622 * 10 8 6 14 14 C 1.50699 * 109.47186 * 239.99652 * 2 1 3 15 15 C 1.39870 * 126.04151 * 280.02697 * 14 2 1 16 16 N 1.30839 * 108.19862 * 179.97438 * 15 14 2 17 17 N 1.40079 * 108.20849 * 359.97438 * 16 15 14 18 18 H 0.96997 * 126.03520 * 179.97438 * 17 16 15 19 19 C 1.34948 * 107.92564 * 0.02562 * 17 16 15 20 20 H 1.09001 * 109.47067 * 59.99909 * 1 2 3 21 21 H 1.08998 * 109.46966 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47091 * 300.00424 * 1 2 3 23 23 H 1.00903 * 110.99454 * 151.04741 * 4 2 1 24 24 H 1.08999 * 109.47391 * 299.99354 * 5 4 2 25 25 H 1.08992 * 109.47603 * 60.00019 * 5 4 2 26 26 H 0.96996 * 120.00169 * 180.02562 * 9 8 6 27 27 H 1.07997 * 125.89701 * 0.02562 * 15 14 2 28 28 H 1.08007 * 126.12251 * 180.26869 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5873 -0.5217 3.5560 7 1 2.8362 -1.5699 3.4798 8 6 2.7305 0.1351 4.7598 9 7 2.4269 1.4114 4.8527 10 14 3.3570 -0.7873 6.2585 11 1 4.7134 -1.3232 5.9786 12 1 3.4203 0.1377 7.4184 13 1 2.4358 -1.9098 6.5696 14 6 2.0323 -0.7105 -1.2304 15 6 2.1210 -2.0957 -1.4023 16 7 2.6014 -2.3294 -2.5966 17 7 2.8334 -1.0985 -3.2236 18 1 3.1888 -0.9712 -4.1171 19 6 2.4764 -0.1209 -2.3645 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 2.9173 -1.1204 1.0288 24 1 2.7588 1.0463 2.1182 25 1 1.0871 0.6164 2.5525 26 1 2.5279 1.8736 5.6995 27 1 1.8404 -2.8433 -0.6750 28 1 2.5307 0.9416 -2.5508 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379335768.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:12 Heat of formation + Delta-G solvation = 43.944804 kcal Electronic energy + Delta-G solvation = -11825.868158 eV Core-core repulsion = 9684.195487 eV Total energy + Delta-G solvation = -2141.672671 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.08579 -37.63632 -34.86582 -32.39351 -31.97149 -29.53274 -28.02533 -24.49181 -22.96872 -22.45731 -20.72742 -18.94575 -18.07396 -16.67894 -16.09802 -15.63054 -15.53639 -15.09354 -14.62161 -14.14135 -13.67936 -13.44288 -12.98011 -12.92026 -12.66902 -12.41190 -12.25464 -11.88338 -11.40343 -11.22607 -10.60550 -10.52563 -9.42027 -9.02078 -8.17922 -6.28189 0.99838 1.43777 1.47186 1.54980 1.85896 2.12294 2.43813 3.15417 3.61240 3.90506 4.15643 4.50523 4.50895 4.68809 4.78860 4.92763 5.09040 5.14659 5.28278 5.38065 5.47200 5.68594 5.70319 6.10623 6.49794 6.56500 6.74310 6.84473 6.97224 7.42561 8.93397 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.061211 B = 0.007506 C = 0.007114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.322328 B = 3729.222136 C = 3934.768838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.158 3.842 3 H 0.031 0.969 4 N -0.679 5.679 5 C 0.210 3.790 6 C -0.534 4.534 7 H 0.063 0.937 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.971 3.029 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.269 1.269 14 C -0.252 4.252 15 C 0.064 3.936 16 N -0.329 5.329 17 N -0.468 5.468 18 H 0.453 0.547 19 C 0.076 3.924 20 H 0.070 0.930 21 H 0.055 0.945 22 H 0.034 0.966 23 H 0.332 0.668 24 H -0.041 1.041 25 H 0.004 0.996 26 H 0.264 0.736 27 H 0.184 0.816 28 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 -1.991 -13.900 14.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.047 3.953 3 H 0.049 0.951 4 N -0.309 5.309 5 C 0.082 3.918 6 C -0.573 4.573 7 H 0.081 0.919 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.795 3.205 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.194 1.194 14 C -0.264 4.264 15 C -0.122 4.122 16 N -0.152 5.152 17 N -0.178 5.178 18 H 0.300 0.700 19 C -0.073 4.073 20 H 0.089 0.911 21 H 0.074 0.926 22 H 0.053 0.947 23 H 0.149 0.851 24 H -0.024 1.024 25 H 0.022 0.978 26 H 0.073 0.927 27 H 0.201 0.799 28 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.310 -2.997 -14.451 14.761 hybrid contribution 0.889 1.132 0.953 1.726 sum 0.579 -1.866 -13.498 13.639 Atomic orbital electron populations 1.21673 0.94178 1.01700 1.00528 1.19701 0.95507 0.93924 0.86122 0.95088 1.60643 1.32576 1.33799 1.03921 1.19224 0.94050 0.89979 0.88526 1.21550 1.43488 0.97010 0.95218 0.91857 1.25913 0.95694 0.95744 1.02259 1.70081 1.49854 1.10628 1.26907 0.85420 0.79072 0.78203 0.77797 1.19260 1.20869 1.19366 1.20221 1.14243 0.93830 0.98101 1.23872 0.97578 0.96613 0.94174 1.77249 1.23711 1.04724 1.09507 1.46256 1.51935 1.03152 1.16460 0.70050 1.22806 0.97731 0.96791 0.89999 0.91086 0.92636 0.94728 0.85079 1.02357 0.97798 0.92697 0.79894 0.77397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 9.40 71.98 0.68 -3.35 15 2 C 0.16 5.57 3.05 44.17 0.13 5.70 15 3 H 0.03 1.14 7.79 -2.39 -0.02 1.12 15 4 N -0.68 -29.32 6.09 -499.47 -3.04 -32.37 15 5 C 0.21 11.31 5.24 85.56 0.45 11.76 15 6 C -0.53 -30.75 9.32 25.60 0.24 -30.52 15 7 H 0.06 3.54 7.81 -2.91 -0.02 3.52 15 8 C 0.00 0.11 5.46 84.65 0.46 0.57 15 9 N -0.93 -56.74 13.29 21.45 0.28 -56.46 15 10 Si 0.97 44.65 29.54 68.60 2.03 46.68 15 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 14 C -0.25 -7.38 4.81 -20.14 -0.10 -7.47 15 15 C 0.06 1.91 11.46 85.24 0.98 2.89 15 16 N -0.33 -9.33 12.70 -57.02 -0.72 -10.06 15 17 N -0.47 -9.81 7.36 -57.59 -0.42 -10.24 15 18 H 0.45 5.87 8.96 -213.34 -1.91 3.96 15 19 C 0.08 1.67 11.90 83.54 0.99 2.66 15 20 H 0.07 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.05 1.81 8.14 -2.39 -0.02 1.79 15 22 H 0.03 1.26 7.45 -2.39 -0.02 1.25 15 23 H 0.33 14.06 8.14 -89.69 -0.73 13.33 15 24 H -0.04 -2.39 8.06 -2.39 -0.02 -2.40 15 25 H 0.00 0.23 7.44 -2.39 -0.02 0.21 15 26 H 0.26 15.09 8.31 -92.71 -0.77 14.32 15 27 H 0.18 5.38 8.06 -2.91 -0.02 5.36 15 28 H 0.21 2.95 8.06 -2.91 -0.02 2.93 15 Total: -1.00 -67.81 247.29 0.48 -67.33 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -1.47 Total: 12.87 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 3.83 Total: -17.76 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -3.91 Total: -109.12 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -67.81 0.48 -67.33 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379335768.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.276 kcal (2) G-P(sol) polarization free energy of solvation -67.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds