Wall clock time and date at job start Mon Mar 30 2020 02:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99962 * 2 1 4 4 H 1.48507 * 109.47343 * 240.00253 * 3 2 1 5 5 H 1.48498 * 109.47058 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47024 * 120.00267 * 3 2 1 7 7 C 1.37875 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99865 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00163 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47143 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47199 * 180.02562 * 10 9 7 12 12 C 1.46904 * 111.00219 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47133 * 179.97438 * 12 11 10 14 14 C 1.31001 * 119.99927 * 234.27102 * 13 12 11 15 15 C 1.50698 * 119.99941 * 354.47032 * 14 13 12 16 16 C 1.53002 * 117.49534 * 182.75939 * 15 14 13 17 17 C 1.53001 * 117.50027 * 114.09834 * 15 14 13 18 18 H 0.97000 * 120.00084 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47104 * 60.00290 * 9 7 2 20 20 H 1.08999 * 109.47493 * 299.99913 * 9 7 2 21 21 H 1.09000 * 109.47255 * 59.99929 * 10 9 7 22 22 H 1.08999 * 109.47273 * 299.99592 * 10 9 7 23 23 H 1.00905 * 111.00279 * 56.04183 * 11 10 9 24 24 H 1.09004 * 109.46750 * 59.99817 * 12 11 10 25 25 H 1.08998 * 109.47410 * 299.99990 * 12 11 10 26 26 H 1.07999 * 119.99681 * 54.27631 * 13 12 11 27 27 H 1.08002 * 119.99583 * 174.20160 * 14 13 12 28 28 H 1.09000 * 115.55108 * 328.42430 * 15 14 13 29 29 H 1.08997 * 117.49914 * 359.97438 * 16 15 14 30 30 H 1.09000 * 117.49642 * 145.02509 * 16 15 14 31 31 H 1.08989 * 117.49837 * 214.97966 * 17 15 14 32 32 H 1.09002 * 117.49446 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0759 -0.0018 13 6 1.6473 -7.3604 -0.0018 14 6 1.8698 -8.2654 0.9189 15 6 2.9966 -8.0788 1.9020 16 6 3.2461 -9.2009 2.9119 17 6 2.6252 -7.8798 3.3729 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 2.8720 -3.6043 0.8894 22 1 2.8720 -3.6043 -0.8905 23 1 0.8746 -4.9841 -0.7827 24 1 3.0634 -6.0353 0.8882 25 1 3.0633 -6.0345 -0.8917 26 1 0.8991 -7.5349 -0.7609 27 1 1.2430 -9.1430 0.9760 28 1 3.8652 -7.5390 1.5248 29 1 2.5949 -10.0737 2.8653 30 1 4.2787 -9.3988 3.1993 31 1 3.2495 -7.2093 3.9633 32 1 1.5658 -7.8834 3.6293 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382063062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:58 Heat of formation + Delta-G solvation = 27.459326 kcal Electronic energy + Delta-G solvation = -11553.957121 eV Core-core repulsion = 9515.109930 eV Total energy + Delta-G solvation = -2038.847191 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.01227 -35.98377 -33.44197 -32.14024 -29.12575 -25.35726 -23.15579 -22.53801 -22.34299 -20.52210 -18.40247 -16.31919 -15.87549 -15.22312 -14.97139 -14.41426 -13.75646 -13.46742 -12.97784 -12.30271 -12.21856 -11.78075 -11.59755 -11.13937 -11.03524 -10.89288 -10.55842 -10.47905 -10.29864 -9.97766 -9.36629 -9.16348 -8.76330 -8.32594 -7.73145 -5.97519 -4.00228 2.21325 3.34934 3.39132 3.41603 3.93603 4.46377 4.63909 4.90271 4.98829 5.01356 5.23069 5.31311 5.38244 5.54269 5.58471 5.76353 5.86920 6.01801 6.06875 6.22149 6.37057 6.43942 6.67416 6.93589 7.00438 7.51736 7.75654 7.85716 7.99587 8.11592 8.45988 9.06855 9.63337 11.13948 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.062592 B = 0.005486 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.237586 B = 5102.595857 C = 5279.185698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.686 5.686 12 C 0.079 3.921 13 C -0.137 4.137 14 C -0.134 4.134 15 C -0.123 4.123 16 C -0.181 4.181 17 C -0.169 4.169 18 H 0.261 0.739 19 H 0.014 0.986 20 H 0.025 0.975 21 H 0.058 0.942 22 H 0.014 0.986 23 H 0.335 0.665 24 H 0.078 0.922 25 H 0.028 0.972 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.876 -15.365 2.318 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.063 4.063 11 N -0.317 5.317 12 C -0.050 4.050 13 C -0.155 4.155 14 C -0.153 4.153 15 C -0.141 4.141 16 C -0.218 4.218 17 C -0.206 4.206 18 H 0.071 0.929 19 H 0.032 0.968 20 H 0.044 0.956 21 H 0.076 0.924 22 H 0.033 0.967 23 H 0.152 0.848 24 H 0.096 0.904 25 H 0.046 0.954 26 H 0.127 0.873 27 H 0.126 0.874 28 H 0.127 0.873 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 4.647 -15.233 3.005 16.207 hybrid contribution 0.717 0.963 -0.966 1.541 sum 5.363 -14.270 2.039 15.381 Atomic orbital electron populations 1.69967 1.06041 1.26691 1.50592 1.25001 0.94840 0.99196 0.95293 0.86642 0.79558 0.83102 0.78585 1.20295 1.21254 1.20223 1.21145 0.92947 0.91047 1.50986 0.92821 1.19067 0.94033 0.90395 0.97735 1.22174 0.97005 0.88490 0.98581 1.60626 1.19645 1.01767 1.49643 1.21110 0.94365 0.89063 1.00482 1.22764 0.99727 0.94710 0.98292 1.22062 0.97672 0.99644 0.95899 1.21215 0.99504 1.02906 0.90510 1.22980 1.01744 0.92741 1.04363 1.22935 1.01863 0.99385 0.96374 0.92937 0.96804 0.95627 0.92385 0.96730 0.84783 0.90395 0.95425 0.87329 0.87387 0.87323 0.88958 0.88945 0.88676 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.52 -15.12 9.11 -34.45 -0.31 -15.43 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.67 5.23 -27.89 -0.15 0.53 16 10 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16 11 N -0.69 -12.89 6.49 -115.05 -0.75 -13.64 16 12 C 0.08 1.21 5.83 -4.97 -0.03 1.19 16 13 C -0.14 -1.81 9.77 -36.03 -0.35 -2.17 16 14 C -0.13 -1.62 9.66 -36.03 -0.35 -1.97 16 15 C -0.12 -1.43 4.84 -91.77 -0.44 -1.88 16 16 C -0.18 -1.75 10.24 -26.69 -0.27 -2.02 16 17 C -0.17 -1.88 10.24 -26.69 -0.27 -2.15 16 18 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 19 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 20 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 21 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 22 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.34 6.01 8.72 -39.29 -0.34 5.67 16 24 H 0.08 1.21 5.70 -51.93 -0.30 0.91 16 25 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.11 1.28 6.81 -51.93 -0.35 0.92 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.02 8.14 -51.94 -0.42 0.59 16 32 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -30.35 273.32 -8.40 -38.75 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.18 Total: 1.36 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -2.30 Total: -20.90 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: -0.01 Total: -40.21 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.35 -8.40 -38.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382063062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.205 kcal (2) G-P(sol) polarization free energy of solvation -30.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds