Wall clock time and date at job start Mon Mar 30 2020 02:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99962 * 2 1 4 4 H 1.48507 * 109.47343 * 240.00253 * 3 2 1 5 5 H 1.48498 * 109.47058 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47024 * 120.00267 * 3 2 1 7 7 C 1.37875 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99865 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00163 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47143 * 180.02562 * 9 7 2 11 11 N 1.46898 * 109.47199 * 180.02562 * 10 9 7 12 12 C 1.46904 * 111.00219 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.47133 * 179.97438 * 12 11 10 14 14 C 1.31001 * 119.99927 * 234.27102 * 13 12 11 15 15 C 1.50698 * 119.99941 * 354.47032 * 14 13 12 16 16 C 1.53002 * 117.49534 * 182.75939 * 15 14 13 17 17 C 1.53001 * 117.50027 * 114.09834 * 15 14 13 18 18 H 0.97000 * 120.00084 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47104 * 60.00290 * 9 7 2 20 20 H 1.08999 * 109.47493 * 299.99913 * 9 7 2 21 21 H 1.09000 * 109.47255 * 59.99929 * 10 9 7 22 22 H 1.08999 * 109.47273 * 299.99592 * 10 9 7 23 23 H 1.00905 * 111.00279 * 56.04183 * 11 10 9 24 24 H 1.09004 * 109.46750 * 59.99817 * 12 11 10 25 25 H 1.08998 * 109.47410 * 299.99990 * 12 11 10 26 26 H 1.07999 * 119.99681 * 54.27631 * 13 12 11 27 27 H 1.08002 * 119.99583 * 174.20160 * 14 13 12 28 28 H 1.09000 * 115.55108 * 328.42430 * 15 14 13 29 29 H 1.08997 * 117.49914 * 359.97438 * 16 15 14 30 30 H 1.09000 * 117.49642 * 145.02509 * 16 15 14 31 31 H 1.08989 * 117.49837 * 214.97966 * 17 15 14 32 32 H 1.09002 * 117.49446 * 359.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5109 -4.9342 -0.0012 12 6 2.4354 -6.0759 -0.0018 13 6 1.6473 -7.3604 -0.0018 14 6 1.8698 -8.2654 0.9189 15 6 2.9966 -8.0788 1.9020 16 6 3.2461 -9.2009 2.9119 17 6 2.6252 -7.8798 3.3729 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8897 21 1 2.8720 -3.6043 0.8894 22 1 2.8720 -3.6043 -0.8905 23 1 0.8746 -4.9841 -0.7827 24 1 3.0634 -6.0353 0.8882 25 1 3.0633 -6.0345 -0.8917 26 1 0.8991 -7.5349 -0.7609 27 1 1.2430 -9.1430 0.9760 28 1 3.8652 -7.5390 1.5248 29 1 2.5949 -10.0737 2.8653 30 1 4.2787 -9.3988 3.1993 31 1 3.2495 -7.2093 3.9633 32 1 1.5658 -7.8834 3.6293 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382063062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:58 Heat of formation + Delta-G solvation = 8.792000 kcal Electronic energy + Delta-G solvation = -11554.766597 eV Core-core repulsion = 9515.109930 eV Total energy + Delta-G solvation = -2039.656667 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.99181 -37.42317 -35.27793 -33.69332 -30.95819 -27.06817 -24.82951 -23.51884 -23.16969 -22.41466 -19.43722 -18.50474 -17.04160 -16.61323 -16.31068 -16.08451 -15.27650 -14.72283 -14.42441 -14.18766 -13.54093 -13.25037 -13.01831 -12.80091 -12.42527 -12.37198 -12.08229 -11.87238 -11.57442 -11.40443 -11.24211 -11.14464 -10.56500 -9.81768 -9.20510 -8.20438 -6.32557 1.21492 1.40588 1.44157 1.52199 2.40975 3.08605 3.12804 3.53839 3.76650 4.03979 4.14560 4.18867 4.33439 4.45257 4.52916 4.58997 4.67340 4.81480 4.94818 5.04340 5.04783 5.28295 5.30821 5.43052 5.64690 5.68140 5.77447 5.94095 6.13561 6.26487 6.53364 6.84303 7.36829 8.91694 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.062592 B = 0.005486 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.237586 B = 5102.595857 C = 5279.185698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.031 3.969 10 C 0.083 3.917 11 N -0.694 5.694 12 C 0.082 3.918 13 C -0.157 4.157 14 C -0.119 4.119 15 C -0.145 4.145 16 C -0.159 4.159 17 C -0.180 4.180 18 H 0.264 0.736 19 H -0.008 1.008 20 H -0.007 1.007 21 H 0.056 0.944 22 H 0.019 0.981 23 H 0.339 0.661 24 H 0.076 0.924 25 H 0.033 0.967 26 H 0.119 0.881 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 -16.016 2.519 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.006 4.006 10 C -0.045 4.045 11 N -0.325 5.325 12 C -0.046 4.046 13 C -0.176 4.176 14 C -0.138 4.138 15 C -0.163 4.163 16 C -0.196 4.196 17 C -0.217 4.217 18 H 0.073 0.927 19 H 0.010 0.990 20 H 0.012 0.988 21 H 0.075 0.925 22 H 0.038 0.962 23 H 0.156 0.844 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.137 0.863 27 H 0.145 0.855 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.836 -15.909 3.204 17.246 hybrid contribution 0.327 1.084 -0.992 1.506 sum 6.163 -14.825 2.212 16.206 Atomic orbital electron populations 1.70107 1.07884 1.27935 1.51276 1.25994 0.95777 1.03435 0.94493 0.85449 0.78229 0.77819 0.79221 1.19062 1.20700 1.19145 1.21586 0.93555 0.92241 1.51218 0.92111 1.18923 0.94312 0.92309 0.95066 1.21795 0.95643 0.88406 0.98694 1.60538 1.20298 1.01582 1.50075 1.21107 0.94102 0.88740 1.00630 1.22699 1.00775 0.94196 0.99891 1.22325 0.97160 0.99617 0.94694 1.21297 0.99462 1.04760 0.90761 1.23078 1.02663 0.92191 1.01688 1.22977 1.01859 1.00952 0.95951 0.92683 0.98957 0.98818 0.92503 0.96245 0.84376 0.90580 0.94894 0.86317 0.85451 0.87809 0.87648 0.87564 0.88653 0.89048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 9 C 0.03 1.73 5.23 29.85 0.16 1.88 16 10 C 0.08 3.67 5.62 86.30 0.49 4.15 16 11 N -0.69 -26.06 6.49 -517.92 -3.36 -29.42 16 12 C 0.08 2.48 5.83 85.56 0.50 2.98 16 13 C -0.16 -3.98 9.77 25.65 0.25 -3.73 16 14 C -0.12 -2.65 9.66 25.64 0.25 -2.41 16 15 C -0.14 -3.12 4.84 -11.54 -0.06 -3.18 16 16 C -0.16 -2.67 10.24 30.62 0.31 -2.35 16 17 C -0.18 -3.76 10.24 30.62 0.31 -3.45 16 18 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 19 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 20 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 21 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 22 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.34 12.22 8.72 -89.69 -0.78 11.44 16 24 H 0.08 2.31 5.70 -2.39 -0.01 2.29 16 25 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 27 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 28 H 0.10 2.32 6.81 -2.39 -0.02 2.31 16 29 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -64.54 273.32 2.15 -62.39 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.29 Total: 15.11 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 2.90 Total: -37.30 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -3.08 Total: -86.93 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -64.54 2.15 -62.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382063062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.183 kcal (2) G-P(sol) polarization free energy of solvation -64.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds