Wall clock time and date at job start Mon Mar 30 2020 02:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86810 * 119.99284 * 2 1 4 4 H 1.48500 * 109.46957 * 269.99904 * 3 2 1 5 5 H 1.48494 * 109.47062 * 30.00153 * 3 2 1 6 6 H 1.48503 * 109.46494 * 150.00295 * 3 2 1 7 7 C 1.37865 * 120.00569 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00612 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47361 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47082 * 180.02562 * 10 9 7 12 12 C 1.46894 * 111.00103 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47344 * 179.97438 * 12 11 10 14 14 C 1.31004 * 119.99903 * 124.99670 * 13 12 11 15 15 C 1.50700 * 119.99903 * 179.97438 * 14 13 12 16 16 C 1.52999 * 117.49951 * 188.62081 * 15 14 13 17 17 C 1.53001 * 60.00133 * 252.51191 * 16 15 14 18 18 H 0.96997 * 120.01082 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47000 * 59.99901 * 9 7 2 20 20 H 1.09001 * 109.47170 * 300.00363 * 9 7 2 21 21 H 1.09003 * 109.46626 * 60.00069 * 10 9 7 22 22 H 1.09001 * 109.47349 * 300.00343 * 10 9 7 23 23 H 1.00898 * 110.99987 * 56.04842 * 11 10 9 24 24 H 1.08999 * 109.47576 * 59.99426 * 12 11 10 25 25 H 1.09006 * 109.47025 * 300.00216 * 12 11 10 26 26 H 1.07999 * 119.99988 * 304.99597 * 13 12 11 27 27 H 1.07995 * 120.00080 * 359.72973 * 14 13 12 28 28 H 1.09002 * 115.55035 * 334.33088 * 15 14 13 29 29 H 1.09003 * 117.49691 * 0.02562 * 16 15 14 30 30 H 1.09001 * 117.49743 * 145.01768 * 16 15 14 31 31 H 1.08997 * 117.49807 * 252.51229 * 17 16 15 32 32 H 1.08998 * 117.51752 * 107.47865 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4463 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5111 -4.9342 -0.0024 12 6 2.4356 -6.0757 -0.0031 13 6 1.6477 -7.3603 -0.0031 14 6 1.8595 -8.2587 -0.9328 15 6 1.0720 -9.5435 -0.9324 16 6 1.5003 -10.6349 -1.9154 17 6 0.2128 -9.8458 -2.1618 18 1 -0.4851 0.8399 -0.0004 19 1 0.6242 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8896 21 1 2.8728 -3.6045 0.8878 22 1 2.8715 -3.6038 -0.8922 23 1 0.8744 -4.9838 -0.7836 24 1 3.0637 -6.0352 0.8868 25 1 3.0636 -6.0342 -0.8931 26 1 0.9084 -7.5403 0.7634 27 1 2.5957 -8.0768 -1.7017 28 1 0.6911 -9.8612 0.0382 29 1 2.3520 -10.4238 -2.5621 30 1 1.4014 -11.6710 -1.5915 31 1 -0.7330 -10.3628 -2.0000 32 1 0.2170 -9.1152 -2.9707 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382063063.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:01 Heat of formation + Delta-G solvation = 23.036750 kcal Electronic energy + Delta-G solvation = -11317.689308 eV Core-core repulsion = 9278.650339 eV Total energy + Delta-G solvation = -2039.038969 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.87564 -36.20108 -33.50803 -32.15867 -29.16207 -25.63104 -23.40082 -22.52582 -21.21174 -20.56424 -19.48935 -16.30843 -15.97623 -15.40171 -14.52264 -14.43655 -13.84421 -13.55047 -12.92046 -12.24129 -12.16419 -11.83482 -11.72943 -11.28930 -11.03403 -10.94351 -10.85127 -10.56014 -10.40243 -9.98365 -9.39755 -9.15028 -8.75745 -8.33887 -7.80778 -5.98138 -4.00910 2.16176 3.33175 3.39208 3.42789 3.82362 4.43951 4.50368 4.77822 4.88775 4.98596 5.10922 5.32491 5.37696 5.45453 5.50981 5.70410 5.86724 5.92142 5.93916 6.09743 6.34359 6.41642 6.72510 6.83475 6.99771 7.49917 7.74809 7.84662 7.98397 8.10394 8.45138 9.06375 9.62820 11.13338 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.094659 B = 0.004628 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 295.728914 B = 6048.070567 C = 6174.452591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.065 3.935 11 N -0.689 5.689 12 C 0.084 3.916 13 C -0.132 4.132 14 C -0.143 4.143 15 C -0.121 4.121 16 C -0.180 4.180 17 C -0.174 4.174 18 H 0.261 0.739 19 H 0.014 0.986 20 H 0.026 0.974 21 H 0.059 0.941 22 H 0.015 0.985 23 H 0.337 0.663 24 H 0.076 0.924 25 H 0.026 0.974 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.701 -17.068 -2.753 17.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.063 4.063 11 N -0.320 5.320 12 C -0.045 4.045 13 C -0.150 4.150 14 C -0.162 4.162 15 C -0.139 4.139 16 C -0.217 4.217 17 C -0.211 4.211 18 H 0.070 0.930 19 H 0.032 0.968 20 H 0.044 0.956 21 H 0.077 0.923 22 H 0.033 0.967 23 H 0.155 0.845 24 H 0.094 0.906 25 H 0.044 0.956 26 H 0.132 0.868 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.477 -16.939 -2.056 17.242 hybrid contribution 0.765 0.966 -0.929 1.543 sum 3.242 -15.972 -2.985 16.569 Atomic orbital electron populations 1.69970 1.06040 1.26599 1.50665 1.25005 0.94847 0.99227 0.95303 0.86579 0.79840 0.83433 0.78052 1.20706 1.21178 1.19868 1.21182 0.92996 0.91025 1.50871 0.92745 1.19080 0.94046 0.90419 0.97768 1.22182 0.97024 0.88461 0.98649 1.60568 1.19716 1.01846 1.49859 1.21009 0.94086 0.89070 1.00320 1.22867 0.99053 0.94544 0.98535 1.22178 1.00117 0.94353 0.99522 1.21190 1.02446 0.95109 0.95123 1.22959 0.98854 0.96558 1.03296 1.22953 0.94938 1.03305 0.99901 0.92981 0.96792 0.95588 0.92296 0.96684 0.84545 0.90567 0.95602 0.86823 0.87558 0.87535 0.88799 0.88856 0.88711 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.30 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 10 C 0.06 1.41 5.62 -3.83 -0.02 1.39 16 11 N -0.69 -12.88 6.49 -115.06 -0.75 -13.63 16 12 C 0.08 1.28 6.12 -4.98 -0.03 1.25 16 13 C -0.13 -1.74 9.41 -36.03 -0.34 -2.08 16 14 C -0.14 -1.68 9.27 -36.03 -0.33 -2.02 16 15 C -0.12 -1.23 5.99 -91.77 -0.55 -1.78 16 16 C -0.18 -1.56 10.23 -26.73 -0.27 -1.84 16 17 C -0.17 -1.62 10.23 -26.73 -0.27 -1.89 16 18 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 19 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 20 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 22 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.34 6.15 8.72 -39.29 -0.34 5.80 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.03 0.38 7.79 -51.93 -0.40 -0.02 16 26 H 0.11 1.50 8.05 -52.49 -0.42 1.07 16 27 H 0.11 1.22 7.84 -52.49 -0.41 0.80 16 28 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 277.20 15.07 4.18 4.18 Total: -1.00 -30.12 277.20 -8.58 -38.71 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.35 Total: 0.72 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -2.38 Total: -20.28 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: -0.01 Total: -40.19 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.12 -8.58 -38.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382063063.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.743 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds