Wall clock time and date at job start Mon Mar 30 2020 02:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86810 * 119.99284 * 2 1 4 4 H 1.48500 * 109.46957 * 269.99904 * 3 2 1 5 5 H 1.48494 * 109.47062 * 30.00153 * 3 2 1 6 6 H 1.48503 * 109.46494 * 150.00295 * 3 2 1 7 7 C 1.37865 * 120.00569 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00612 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47361 * 179.97438 * 9 7 2 11 11 N 1.46898 * 109.47082 * 180.02562 * 10 9 7 12 12 C 1.46894 * 111.00103 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47344 * 179.97438 * 12 11 10 14 14 C 1.31004 * 119.99903 * 124.99670 * 13 12 11 15 15 C 1.50700 * 119.99903 * 179.97438 * 14 13 12 16 16 C 1.52999 * 117.49951 * 188.62081 * 15 14 13 17 17 C 1.53001 * 60.00133 * 252.51191 * 16 15 14 18 18 H 0.96997 * 120.01082 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47000 * 59.99901 * 9 7 2 20 20 H 1.09001 * 109.47170 * 300.00363 * 9 7 2 21 21 H 1.09003 * 109.46626 * 60.00069 * 10 9 7 22 22 H 1.09001 * 109.47349 * 300.00343 * 10 9 7 23 23 H 1.00898 * 110.99987 * 56.04842 * 11 10 9 24 24 H 1.08999 * 109.47576 * 59.99426 * 12 11 10 25 25 H 1.09006 * 109.47025 * 300.00216 * 12 11 10 26 26 H 1.07999 * 119.99988 * 304.99597 * 13 12 11 27 27 H 1.07995 * 120.00080 * 359.72973 * 14 13 12 28 28 H 1.09002 * 115.55035 * 334.33088 * 15 14 13 29 29 H 1.09003 * 117.49691 * 0.02562 * 16 15 14 30 30 H 1.09001 * 117.49743 * 145.01768 * 16 15 14 31 31 H 1.08997 * 117.49807 * 252.51229 * 17 16 15 32 32 H 1.08998 * 117.51752 * 107.47865 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4463 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 7 1.5111 -4.9342 -0.0024 12 6 2.4356 -6.0757 -0.0031 13 6 1.6477 -7.3603 -0.0031 14 6 1.8595 -8.2587 -0.9328 15 6 1.0720 -9.5435 -0.9324 16 6 1.5003 -10.6349 -1.9154 17 6 0.2128 -9.8458 -2.1618 18 1 -0.4851 0.8399 -0.0004 19 1 0.6242 -2.5567 -0.8903 20 1 0.6248 -2.5571 0.8896 21 1 2.8728 -3.6045 0.8878 22 1 2.8715 -3.6038 -0.8922 23 1 0.8744 -4.9838 -0.7836 24 1 3.0637 -6.0352 0.8868 25 1 3.0636 -6.0342 -0.8931 26 1 0.9084 -7.5403 0.7634 27 1 2.5957 -8.0768 -1.7017 28 1 0.6911 -9.8612 0.0382 29 1 2.3520 -10.4238 -2.5621 30 1 1.4014 -11.6710 -1.5915 31 1 -0.7330 -10.3628 -2.0000 32 1 0.2170 -9.1152 -2.9707 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382063063.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:01 Heat of formation + Delta-G solvation = 4.763461 kcal Electronic energy + Delta-G solvation = -11318.481697 eV Core-core repulsion = 9278.650339 eV Total energy + Delta-G solvation = -2039.831358 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.75636 -37.60898 -35.34219 -33.73504 -30.96737 -27.23325 -25.11648 -23.21508 -22.51875 -22.12930 -20.48446 -18.51660 -17.14052 -16.59480 -16.33313 -15.66114 -15.37685 -14.80764 -14.38040 -14.14176 -13.48314 -13.26201 -12.86238 -12.77663 -12.51034 -12.39064 -12.17149 -11.91589 -11.80047 -11.44664 -11.32861 -11.11490 -10.57278 -9.73140 -9.32896 -8.20784 -6.32931 1.17738 1.40540 1.42479 1.53769 2.40650 3.06232 3.12462 3.42962 3.76761 4.04081 4.11999 4.18952 4.31336 4.44169 4.52984 4.57886 4.74247 4.79712 4.84090 5.03846 5.04804 5.26447 5.27201 5.42782 5.65013 5.72816 5.75858 5.83099 6.12149 6.26379 6.52026 6.84203 7.36568 8.91532 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.094659 B = 0.004628 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 295.728914 B = 6048.070567 C = 6174.452591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.030 3.970 10 C 0.082 3.918 11 N -0.697 5.697 12 C 0.088 3.912 13 C -0.151 4.151 14 C -0.123 4.123 15 C -0.140 4.140 16 C -0.168 4.168 17 C -0.175 4.175 18 H 0.264 0.736 19 H -0.009 1.009 20 H -0.005 1.005 21 H 0.060 0.940 22 H 0.020 0.980 23 H 0.339 0.661 24 H 0.077 0.923 25 H 0.034 0.966 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.817 -17.724 -3.223 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.080 0.920 9 C -0.008 4.008 10 C -0.046 4.046 11 N -0.328 5.328 12 C -0.040 4.040 13 C -0.169 4.169 14 C -0.142 4.142 15 C -0.158 4.158 16 C -0.204 4.204 17 C -0.212 4.212 18 H 0.073 0.927 19 H 0.010 0.990 20 H 0.013 0.987 21 H 0.078 0.922 22 H 0.038 0.962 23 H 0.156 0.844 24 H 0.095 0.905 25 H 0.052 0.948 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.602 -17.620 -2.529 18.161 hybrid contribution 0.383 1.075 -0.814 1.402 sum 3.985 -16.545 -3.343 17.343 Atomic orbital electron populations 1.70108 1.07886 1.27886 1.51352 1.26006 0.95796 1.03490 0.94535 0.85384 0.78613 0.78106 0.78546 1.19648 1.20658 1.18661 1.21618 0.93590 0.92214 1.51073 0.92044 1.18942 0.94352 0.92362 0.95097 1.21813 0.95655 0.88310 0.98869 1.60482 1.20380 1.01716 1.50175 1.21019 0.93799 0.88508 1.00705 1.22644 1.00121 0.94273 0.99896 1.22357 0.99161 0.94412 0.98263 1.21249 1.03469 0.95118 0.95983 1.23061 0.98514 0.96869 1.01993 1.23028 0.95859 1.03421 0.98901 0.92681 0.99040 0.98704 0.92198 0.96192 0.84388 0.90477 0.94824 0.87052 0.87040 0.87117 0.88383 0.87278 0.87556 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.79 13.29 21.44 0.28 -57.51 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.55 -31.86 9.11 25.60 0.23 -31.62 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.65 5.23 29.85 0.16 1.80 16 10 C 0.08 3.60 5.62 86.30 0.49 4.08 16 11 N -0.70 -26.05 6.49 -517.94 -3.36 -29.41 16 12 C 0.09 2.61 6.12 85.56 0.52 3.13 16 13 C -0.15 -3.85 9.41 25.64 0.24 -3.61 16 14 C -0.12 -2.71 9.27 25.64 0.24 -2.47 16 15 C -0.14 -2.61 5.99 -11.54 -0.07 -2.68 16 16 C -0.17 -2.49 10.23 30.59 0.31 -2.18 16 17 C -0.18 -2.90 10.23 30.60 0.31 -2.59 16 18 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 19 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 20 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 21 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 22 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.34 12.44 8.72 -89.70 -0.78 11.65 16 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.03 0.95 7.79 -2.38 -0.02 0.93 16 26 H 0.11 2.89 8.05 -2.91 -0.02 2.86 16 27 H 0.11 2.33 7.84 -2.91 -0.02 2.31 16 28 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -64.01 277.20 2.13 -61.88 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.29 Total: 14.01 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 2.90 Total: -35.69 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -3.08 Total: -86.92 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -64.01 2.13 -61.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382063063.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.645 kcal (2) G-P(sol) polarization free energy of solvation -64.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds