Wall clock time and date at job start Mon Mar 30 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46902 * 109.47489 * 120.00408 * 2 1 3 13 13 C 1.46901 * 110.99865 * 274.99915 * 12 2 1 14 14 C 1.50697 * 109.47446 * 179.97438 * 13 12 2 15 15 C 1.39863 * 126.04140 * 269.69589 * 14 13 12 16 16 N 1.30843 * 108.20322 * 179.81395 * 15 14 13 17 17 N 1.40085 * 108.20286 * 0.43836 * 16 15 14 18 18 H 0.97003 * 126.03624 * 179.69527 * 17 16 15 19 19 C 1.34948 * 107.92574 * 359.71999 * 17 16 15 20 20 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 21 21 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 22 22 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 23 23 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 24 24 H 1.00897 * 110.99993 * 151.04686 * 12 2 1 25 25 H 1.09000 * 109.47455 * 300.00163 * 13 12 2 26 26 H 1.09005 * 109.47362 * 59.99728 * 13 12 2 27 27 H 1.08001 * 125.90060 * 359.97438 * 15 14 13 28 28 H 1.08001 * 126.12908 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2225 2.3469 14 6 2.5875 -0.5219 3.5560 15 6 1.8005 -1.1961 4.4952 16 7 2.5947 -1.7198 5.3935 17 7 3.9136 -1.3863 5.0592 18 1 4.7089 -1.6389 5.5537 19 6 3.8821 -0.6512 3.9279 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.9026 -0.5282 -4.4376 24 1 2.9174 -1.1205 1.0286 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6162 2.5526 27 1 0.7233 -1.2736 4.4801 28 1 4.7370 -0.2400 3.4117 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388391656.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:19 Heat of formation + Delta-G solvation = 78.642826 kcal Electronic energy + Delta-G solvation = -11886.032444 eV Core-core repulsion = 9745.864392 eV Total energy + Delta-G solvation = -2140.168052 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.95785 -36.14008 -32.80721 -31.38271 -30.78010 -28.41207 -25.29572 -23.93463 -21.76752 -19.92487 -19.76428 -17.76182 -16.58937 -15.27525 -14.55641 -14.34344 -13.83160 -13.56179 -13.29668 -12.81655 -12.53972 -12.10164 -11.70030 -11.06088 -10.85470 -10.62544 -10.41622 -10.05769 -9.51065 -9.47570 -9.00944 -8.58994 -8.35273 -7.39813 -6.08148 -4.07763 2.03364 2.97361 3.03885 3.28945 3.37818 3.40491 4.40332 4.96581 5.05657 5.24429 5.42991 5.53252 5.72487 6.02636 6.18041 6.36768 6.49025 6.59083 6.76696 6.80209 6.85218 7.37103 7.43355 7.61401 7.79200 7.99633 8.41040 8.65580 8.97099 9.54396 11.04913 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.071397 B = 0.007959 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.080032 B = 3517.083270 C = 3687.669734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.180 3.820 3 H 0.000 1.000 4 C -0.519 4.519 5 H 0.078 0.922 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.892 3.108 9 H -0.278 1.278 10 H -0.268 1.268 11 H -0.299 1.299 12 N -0.674 5.674 13 C 0.131 3.869 14 C -0.218 4.218 15 C 0.069 3.931 16 N -0.307 5.307 17 N -0.484 5.484 18 H 0.435 0.565 19 C 0.055 3.945 20 H 0.026 0.974 21 H 0.036 0.964 22 H 0.057 0.943 23 H 0.264 0.736 24 H 0.338 0.662 25 H 0.026 0.974 26 H 0.071 0.929 27 H 0.182 0.818 28 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.979 2.956 13.346 13.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.072 3.928 3 H 0.018 0.982 4 C -0.557 4.557 5 H 0.096 0.904 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.723 3.277 9 H -0.205 1.205 10 H -0.193 1.193 11 H -0.226 1.226 12 N -0.306 5.306 13 C 0.000 4.000 14 C -0.229 4.229 15 C -0.118 4.118 16 N -0.130 5.130 17 N -0.192 5.192 18 H 0.278 0.722 19 C -0.093 4.093 20 H 0.045 0.955 21 H 0.054 0.946 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.156 0.844 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.199 0.801 28 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.408 2.023 14.358 14.568 hybrid contribution 0.544 1.629 -1.072 2.025 sum 1.952 3.653 13.286 13.917 Atomic orbital electron populations 1.22066 0.98728 1.01025 0.97668 1.19543 0.91800 0.92950 0.88557 0.98211 1.21121 1.32228 1.13687 0.88642 0.90433 1.24943 0.95715 0.96758 0.95749 1.69899 1.45661 1.40319 0.97920 0.86785 0.80702 0.83546 0.76694 1.20500 1.19325 1.22647 1.60549 1.32991 1.32437 1.04619 1.20212 0.99423 0.92460 0.87891 1.20238 0.91920 1.09384 1.01395 1.23800 1.00182 0.95701 0.92135 1.77267 0.87248 1.23992 1.24474 1.46221 1.07778 1.43342 1.21848 0.72181 1.22413 0.99385 0.97461 0.90002 0.95486 0.94602 0.92346 0.92620 0.84383 0.95631 0.91079 0.80115 0.80968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.90 37.16 0.33 -2.73 15 2 C 0.18 4.26 2.19 -68.86 -0.15 4.11 15 3 H 0.00 0.01 6.86 -51.93 -0.36 -0.35 15 4 C -0.52 -14.49 9.17 -34.44 -0.32 -14.80 15 5 H 0.08 2.34 7.86 -52.49 -0.41 1.93 15 6 C 0.07 2.02 5.45 -17.82 -0.10 1.93 15 7 N -0.90 -27.44 13.96 55.43 0.77 -26.66 15 8 Si 0.89 22.01 24.37 -169.99 -4.14 17.87 15 9 H -0.28 -6.72 6.87 56.52 0.39 -6.33 15 10 H -0.27 -6.34 6.53 56.52 0.37 -5.97 15 11 H -0.30 -7.36 7.11 56.52 0.40 -6.96 15 12 N -0.67 -13.71 6.29 -109.22 -0.69 -14.39 15 13 C 0.13 2.17 5.96 -4.98 -0.03 2.14 15 14 C -0.22 -3.22 5.61 -105.06 -0.59 -3.81 15 15 C 0.07 1.00 11.96 -17.37 -0.21 0.80 15 16 N -0.31 -4.50 12.70 30.62 0.39 -4.11 15 17 N -0.48 -5.74 7.36 30.45 0.22 -5.51 15 18 H 0.44 3.57 8.96 -182.61 -1.64 1.93 15 19 C 0.06 0.69 11.90 -17.22 -0.20 0.48 15 20 H 0.03 0.52 7.45 -51.93 -0.39 0.13 15 21 H 0.04 0.82 3.27 -51.93 -0.17 0.65 15 22 H 0.06 1.32 8.14 -51.93 -0.42 0.89 15 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 15 24 H 0.34 6.94 8.22 -39.29 -0.32 6.61 15 25 H 0.03 0.42 8.06 -51.93 -0.42 0.00 15 26 H 0.07 1.16 7.44 -51.93 -0.39 0.77 15 27 H 0.18 2.29 8.06 -52.49 -0.42 1.87 15 28 H 0.17 1.65 8.06 -52.49 -0.42 1.23 15 LS Contribution 237.02 15.07 3.57 3.57 Total: -1.00 -31.83 237.02 -5.68 -37.51 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.54 Total: 3.63 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -1.27 Total: -11.89 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.70 Total: -50.68 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -31.83 -5.68 -37.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388391656.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.151 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds