Wall clock time and date at job start Mon Mar 30 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46902 * 109.47489 * 120.00408 * 2 1 3 13 13 C 1.46901 * 110.99865 * 274.99915 * 12 2 1 14 14 C 1.50697 * 109.47446 * 179.97438 * 13 12 2 15 15 C 1.39863 * 126.04140 * 269.69589 * 14 13 12 16 16 N 1.30843 * 108.20322 * 179.81395 * 15 14 13 17 17 N 1.40085 * 108.20286 * 0.43836 * 16 15 14 18 18 H 0.97003 * 126.03624 * 179.69527 * 17 16 15 19 19 C 1.34948 * 107.92574 * 359.71999 * 17 16 15 20 20 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 21 21 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 22 22 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 23 23 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 24 24 H 1.00897 * 110.99993 * 151.04686 * 12 2 1 25 25 H 1.09000 * 109.47455 * 300.00163 * 13 12 2 26 26 H 1.09005 * 109.47362 * 59.99728 * 13 12 2 27 27 H 1.08001 * 125.90060 * 359.97438 * 15 14 13 28 28 H 1.08001 * 126.12908 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2225 2.3469 14 6 2.5875 -0.5219 3.5560 15 6 1.8005 -1.1961 4.4952 16 7 2.5947 -1.7198 5.3935 17 7 3.9136 -1.3863 5.0592 18 1 4.7089 -1.6389 5.5537 19 6 3.8821 -0.6512 3.9279 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.9026 -0.5282 -4.4376 24 1 2.9174 -1.1205 1.0286 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6162 2.5526 27 1 0.7233 -1.2736 4.4801 28 1 4.7370 -0.2400 3.4117 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388391656.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:19 Heat of formation + Delta-G solvation = 53.570737 kcal Electronic energy + Delta-G solvation = -11887.119651 eV Core-core repulsion = 9745.864392 eV Total energy + Delta-G solvation = -2141.255259 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.99791 -37.82273 -34.68465 -32.82089 -32.05485 -29.86860 -27.21092 -25.42920 -22.82846 -21.68772 -20.93762 -19.10439 -18.39478 -17.09762 -15.81517 -15.63258 -15.26473 -15.03099 -14.99977 -14.38747 -13.95876 -13.79778 -13.22057 -12.74234 -12.61276 -12.35844 -12.00200 -11.59563 -11.38247 -11.00132 -10.73689 -10.51930 -9.48525 -8.97649 -8.27978 -6.32360 1.02155 1.35346 1.38981 1.50068 1.86637 2.13673 2.34685 3.07867 3.74500 4.00193 4.13843 4.35802 4.61629 4.68444 4.79857 4.84906 4.92295 5.00167 5.10254 5.27756 5.55976 5.69525 5.72822 6.05303 6.50018 6.58633 6.72218 6.77754 6.91008 7.34787 8.88567 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.071397 B = 0.007959 C = 0.007591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.080032 B = 3517.083270 C = 3687.669734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.184 3.816 3 H 0.000 1.000 4 C -0.523 4.523 5 H 0.038 0.962 6 C 0.012 3.988 7 N -0.949 5.949 8 Si 0.955 3.045 9 H -0.268 1.268 10 H -0.247 1.247 11 H -0.300 1.300 12 N -0.679 5.679 13 C 0.137 3.863 14 C -0.246 4.246 15 C 0.060 3.940 16 N -0.332 5.332 17 N -0.471 5.471 18 H 0.451 0.549 19 C 0.072 3.928 20 H 0.059 0.941 21 H 0.030 0.970 22 H 0.048 0.952 23 H 0.266 0.734 24 H 0.333 0.667 25 H 0.032 0.968 26 H 0.076 0.924 27 H 0.192 0.808 28 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.642 4.361 14.765 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.075 3.925 3 H 0.018 0.982 4 C -0.561 4.561 5 H 0.056 0.944 6 C -0.185 4.185 7 N -0.589 5.589 8 Si 0.782 3.218 9 H -0.194 1.194 10 H -0.170 1.170 11 H -0.228 1.228 12 N -0.310 5.310 13 C 0.007 3.993 14 C -0.258 4.258 15 C -0.126 4.126 16 N -0.155 5.155 17 N -0.181 5.181 18 H 0.297 0.703 19 C -0.078 4.078 20 H 0.078 0.922 21 H 0.048 0.952 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.151 0.849 25 H 0.050 0.950 26 H 0.094 0.906 27 H 0.209 0.791 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.080 3.418 15.833 16.233 hybrid contribution 0.767 1.104 -1.446 1.975 sum 1.847 4.522 14.387 15.193 Atomic orbital electron populations 1.21989 0.97386 1.00893 0.98965 1.19397 0.92803 0.92327 0.88001 0.98228 1.21431 1.31294 1.12552 0.90837 0.94404 1.25823 0.97252 1.00121 0.95312 1.70049 1.47707 1.42546 0.98616 0.85763 0.79058 0.79794 0.77209 1.19373 1.17048 1.22771 1.60533 1.32835 1.33210 1.04433 1.20168 1.00091 0.92075 0.86970 1.20156 0.93052 1.11130 1.01429 1.24052 1.00972 0.95525 0.92077 1.77227 0.88344 1.24843 1.25117 1.46263 1.07729 1.42414 1.21668 0.70251 1.22843 0.99590 0.95877 0.89444 0.92175 0.95172 0.93302 0.92526 0.84919 0.94965 0.90572 0.79079 0.78019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.68 8.90 71.98 0.64 -5.04 15 2 C 0.18 8.43 2.19 44.17 0.10 8.53 15 3 H 0.00 0.01 6.86 -2.39 -0.02 -0.01 15 4 C -0.52 -29.52 9.17 25.60 0.23 -29.28 15 5 H 0.04 2.37 7.86 -2.91 -0.02 2.35 15 6 C 0.01 0.71 5.45 84.66 0.46 1.17 15 7 N -0.95 -59.08 13.96 21.45 0.30 -58.78 15 8 Si 0.95 44.59 24.37 68.60 1.67 46.27 15 9 H -0.27 -11.99 6.87 99.48 0.68 -11.30 15 10 H -0.25 -10.59 6.53 99.48 0.65 -9.94 15 11 H -0.30 -13.96 7.11 99.48 0.71 -13.25 15 12 N -0.68 -26.74 6.29 -499.45 -3.14 -29.88 15 13 C 0.14 4.23 5.96 85.56 0.51 4.74 15 14 C -0.25 -6.75 5.61 -20.15 -0.11 -6.86 15 15 C 0.06 1.65 11.96 85.23 1.02 2.67 15 16 N -0.33 -9.14 12.70 -57.02 -0.72 -9.86 15 17 N -0.47 -10.01 7.36 -57.59 -0.42 -10.43 15 18 H 0.45 6.21 8.96 -213.33 -1.91 4.30 15 19 C 0.07 1.58 11.90 83.54 0.99 2.58 15 20 H 0.06 2.12 7.45 -2.39 -0.02 2.10 15 21 H 0.03 1.29 3.27 -2.39 -0.01 1.28 15 22 H 0.05 2.12 8.14 -2.39 -0.02 2.10 15 23 H 0.27 15.50 8.31 -92.70 -0.77 14.73 15 24 H 0.33 13.54 8.22 -89.70 -0.74 12.81 15 25 H 0.03 0.96 8.06 -2.39 -0.02 0.94 15 26 H 0.08 2.27 7.44 -2.38 -0.02 2.25 15 27 H 0.19 4.56 8.06 -2.91 -0.02 4.54 15 28 H 0.20 3.14 8.06 -2.91 -0.02 3.12 15 Total: -1.00 -68.14 237.02 -0.02 -68.16 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -1.55 Total: 16.02 kcal Atomic # 6 Polarization: -25.33 SS G_CDS: 3.84 Total: -21.49 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -3.99 Total: -108.96 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.67 Total: 46.27 kcal Total: -68.14 -0.02 -68.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388391656.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.731 kcal (2) G-P(sol) polarization free energy of solvation -68.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds