Wall clock time and date at job start Mon Mar 30 2020 02:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00479 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00006 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00274 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99895 * 3 2 1 7 7 C 1.38811 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 179.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 C 1.53001 * 109.47086 * 179.97438 * 10 9 7 12 12 C 1.52998 * 112.85175 * 179.97438 * 11 10 9 13 13 C 1.53001 * 117.49823 * 18.28728 * 12 11 10 14 14 C 1.53003 * 117.49713 * 309.66489 * 12 11 10 15 15 C 1.53785 * 113.61185 * 48.79998 * 11 10 9 16 16 C 1.53947 * 87.02146 * 220.04881 * 15 11 10 17 17 C 1.53780 * 113.61510 * 311.19633 * 11 10 9 18 18 H 0.97004 * 119.99151 * 359.97438 * 1 2 3 19 19 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 20 20 H 1.08998 * 109.47351 * 299.99725 * 10 9 7 21 21 H 1.09001 * 109.47288 * 59.99879 * 10 9 7 22 22 H 1.09001 * 115.55402 * 164.00248 * 12 11 10 23 23 H 1.08997 * 117.49945 * 0.02562 * 13 12 11 24 24 H 1.09005 * 117.49896 * 145.01922 * 13 12 11 25 25 H 1.08999 * 117.49975 * 214.97590 * 14 12 11 26 26 H 1.09001 * 117.49810 * 0.02562 * 14 12 11 27 27 H 1.08998 * 113.61472 * 334.57252 * 15 11 10 28 28 H 1.09000 * 113.61063 * 105.47062 * 15 11 10 29 29 H 1.09006 * 113.53756 * 270.81472 * 16 15 11 30 30 H 1.08998 * 113.67077 * 139.93261 * 16 15 11 31 31 H 1.09000 * 113.61728 * 254.52960 * 17 11 10 32 32 H 1.08996 * 113.61445 * 25.43078 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6568 -0.0082 11 6 1.0635 -4.8197 -0.0074 12 6 1.7490 -6.1875 -0.0147 13 6 3.2194 -6.2431 0.4044 14 6 2.8353 -6.4277 -1.0651 15 6 -0.0466 -4.6817 -1.0627 16 6 -1.0152 -5.2294 0.0012 17 6 -0.0378 -4.6878 1.0578 18 1 -0.4849 0.8401 0.0004 19 1 0.3554 -2.3880 -0.0016 20 1 2.6811 -3.7119 -0.9007 21 1 2.6878 -3.7173 0.8792 22 1 1.1157 -7.0323 0.2565 23 1 3.6983 -5.3052 0.6858 24 1 3.5538 -7.1244 0.9518 25 1 2.9170 -7.4304 -1.4844 26 1 3.0619 -5.6110 -1.7506 27 1 -0.2508 -3.6501 -1.3493 28 1 0.0812 -5.3428 -1.9198 29 1 -1.0961 -6.3165 -0.0022 30 1 -1.9849 -4.7318 0.0077 31 1 0.0970 -5.3538 1.9101 32 1 -0.2396 -3.6579 1.3519 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391419742.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:33 Heat of formation + Delta-G solvation = 35.086437 kcal Electronic energy + Delta-G solvation = -12619.208084 eV Core-core repulsion = 10580.691629 eV Total energy + Delta-G solvation = -2038.516455 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.00557 -36.77722 -35.91911 -32.92474 -28.75276 -26.51863 -25.78301 -23.85277 -23.02988 -22.41823 -19.31069 -18.61428 -17.07613 -16.53611 -16.24627 -15.38331 -15.04842 -14.83630 -14.43224 -14.13152 -13.43754 -13.09274 -12.87778 -12.57501 -12.46542 -12.21528 -12.07809 -11.88839 -11.47927 -11.34845 -11.12557 -11.01275 -10.68017 -10.47393 -8.98199 -7.96524 -5.24534 1.44782 1.46962 1.55496 2.54488 2.92706 3.36412 3.64522 3.79803 3.83232 4.04971 4.08962 4.20833 4.34064 4.35485 4.47515 4.80706 4.83802 4.92100 4.97961 5.01401 5.09115 5.10859 5.15790 5.26983 5.34754 5.37596 5.45691 5.55873 5.75832 6.26779 7.32670 8.10451 8.35013 9.27191 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.046191 B = 0.009975 C = 0.008740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.028172 B = 2806.352163 C = 3202.953164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.248 4.248 8 H 0.071 0.929 9 N -0.741 5.741 10 C 0.166 3.834 11 C -0.056 4.056 12 C -0.125 4.125 13 C -0.183 4.183 14 C -0.173 4.173 15 C -0.131 4.131 16 C -0.125 4.125 17 C -0.131 4.131 18 H 0.252 0.748 19 H 0.378 0.622 20 H 0.012 0.988 21 H 0.016 0.984 22 H 0.125 0.875 23 H 0.080 0.920 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 -13.980 -0.172 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.195 1.195 7 C -0.380 4.380 8 H 0.089 0.911 9 N -0.386 5.386 10 C 0.040 3.960 11 C -0.057 4.057 12 C -0.143 4.143 13 C -0.220 4.220 14 C -0.210 4.210 15 C -0.168 4.168 16 C -0.162 4.162 17 C -0.169 4.169 18 H 0.060 0.940 19 H 0.212 0.788 20 H 0.030 0.970 21 H 0.034 0.966 22 H 0.143 0.857 23 H 0.098 0.902 24 H 0.132 0.868 25 H 0.134 0.866 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.123 0.877 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.437 -13.878 -0.162 14.091 hybrid contribution 0.040 1.435 -0.032 1.436 sum 2.477 -12.443 -0.195 12.689 Atomic orbital electron populations 1.69822 1.06555 1.26073 1.59472 1.25567 0.96456 1.01053 1.03682 0.85122 0.77681 0.79396 0.77462 1.21356 1.21943 1.19544 1.19637 0.91410 0.85590 1.41332 0.91092 1.42695 1.05881 1.00895 1.89097 1.20616 0.93572 0.85213 0.96630 1.21440 0.93559 0.93175 0.97506 1.21899 0.91236 0.95833 1.05351 1.23080 0.97342 1.03360 0.98175 1.22973 1.02958 1.03091 0.91984 1.22911 0.96394 1.00352 0.97181 1.22805 0.96833 1.01352 0.95247 1.22888 0.96309 1.00542 0.97120 0.93962 0.78769 0.97009 0.96639 0.85689 0.90171 0.86813 0.86625 0.90386 0.92704 0.90599 0.87746 0.92115 0.90440 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.66 13.06 21.65 0.28 -60.38 16 2 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 3 Si 0.97 47.38 29.55 68.60 2.03 49.41 16 4 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 8 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -39.57 4.76 -343.46 -1.64 -41.21 16 10 C 0.17 7.15 4.64 86.38 0.40 7.55 16 11 C -0.06 -1.92 1.14 -51.65 -0.06 -1.97 16 12 C -0.12 -3.25 5.16 -10.79 -0.06 -3.30 16 13 C -0.18 -4.51 9.80 30.60 0.30 -4.21 16 14 C -0.17 -4.15 9.93 30.60 0.30 -3.85 16 15 C -0.13 -4.45 6.97 31.18 0.22 -4.24 16 16 C -0.13 -3.62 7.80 31.18 0.24 -3.38 16 17 C -0.13 -4.44 6.96 31.12 0.22 -4.22 16 18 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 19 H 0.38 21.11 5.00 -92.71 -0.46 20.65 16 20 H 0.01 0.53 7.09 -2.39 -0.02 0.51 16 21 H 0.02 0.69 6.86 -2.39 -0.02 0.68 16 22 H 0.13 2.68 7.90 -2.39 -0.02 2.67 16 23 H 0.08 2.33 6.20 -2.39 -0.01 2.31 16 24 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 25 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.08 2.17 7.23 -2.39 -0.02 2.15 16 27 H 0.05 2.31 6.63 -2.39 -0.02 2.30 16 28 H 0.08 2.27 8.10 -2.39 -0.02 2.25 16 29 H 0.10 2.35 7.95 -2.38 -0.02 2.33 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 2.27 8.10 -2.39 -0.02 2.25 16 32 H 0.06 2.35 6.64 -2.39 -0.02 2.34 16 Total: -1.00 -64.90 254.82 4.18 -60.72 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.63 Total: 26.71 kcal Atomic # 6 Polarization: -38.12 SS G_CDS: 2.87 Total: -35.25 kcal Atomic # 7 Polarization: -100.24 SS G_CDS: -1.35 Total: -101.59 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -64.90 4.18 -60.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391419742.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.805 kcal (2) G-P(sol) polarization free energy of solvation -64.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds