Wall clock time and date at job start Mon Mar 30 2020 03:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00240 * 2 1 4 4 H 1.48504 * 109.46877 * 269.99708 * 3 2 1 5 5 H 1.48501 * 109.46909 * 29.99601 * 3 2 1 6 6 H 1.48496 * 109.46980 * 149.99815 * 3 2 1 7 7 C 1.37879 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00034 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99857 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00037 * 180.02562 * 10 9 7 12 12 H 1.09002 * 109.76440 * 35.45232 * 11 10 9 13 13 C 1.53306 * 109.62121 * 275.00234 * 11 10 9 14 14 C 1.52876 * 108.58116 * 165.82692 * 13 11 10 15 15 C 1.52709 * 110.15423 * 54.52410 * 14 13 11 16 16 H 1.08997 * 115.38899 * 127.17091 * 15 14 13 17 17 C 1.53651 * 116.02947 * 269.79639 * 15 14 13 18 18 C 1.49169 * 60.26629 * 111.29699 * 17 15 14 19 19 H 1.08998 * 116.23673 * 106.62490 * 18 17 15 20 20 C 1.50517 * 110.43971 * 152.46735 * 11 10 9 21 21 H 0.97005 * 119.99707 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.47175 * 60.00348 * 9 7 2 23 23 H 1.08996 * 109.47538 * 300.00590 * 9 7 2 24 24 H 1.00899 * 110.99650 * 56.05076 * 10 9 7 25 25 H 1.08998 * 109.61499 * 46.09846 * 13 11 10 26 26 H 1.09004 * 109.61511 * 285.55863 * 13 11 10 27 27 H 1.09001 * 109.35469 * 174.72899 * 14 13 11 28 28 H 1.08997 * 109.35565 * 294.31324 * 14 13 11 29 29 H 1.09002 * 117.53340 * 219.06420 * 17 15 14 30 30 H 1.08997 * 117.53839 * 4.30907 * 17 15 14 31 31 H 1.09001 * 105.60860 * 53.82213 * 20 11 10 32 32 H 1.09002 * 111.81019 * 295.11449 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5791 0.0001 11 6 5.4695 -2.6183 0.0001 12 1 5.8603 -1.7928 0.5951 13 6 5.9876 -2.5063 -1.4384 14 6 7.4834 -2.1938 -1.3946 15 6 8.2141 -3.2359 -0.5508 16 1 9.0642 -3.7167 -1.0349 17 6 8.3461 -2.9189 0.9468 18 6 7.4669 -4.0389 0.5024 19 1 7.8396 -5.0465 0.6869 20 6 5.9616 -3.8825 0.6522 21 1 -0.4850 0.8401 -0.0004 22 1 3.8752 -0.6797 0.8895 23 1 3.8745 -0.6808 -0.8904 24 1 3.6253 -3.0955 -0.7811 25 1 5.4611 -1.7041 -1.9555 26 1 5.8258 -3.4496 -1.9601 27 1 7.8844 -2.2038 -2.4081 28 1 7.6335 -1.2061 -0.9586 29 1 9.2858 -3.1765 1.4355 30 1 7.8537 -2.0197 1.3169 31 1 5.4614 -4.6968 0.1279 32 1 5.6994 -3.9214 1.7095 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403173888.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:34 Heat of formation + Delta-G solvation = -10.494468 kcal Electronic energy + Delta-G solvation = -12406.066920 eV Core-core repulsion = 10365.573928 eV Total energy + Delta-G solvation = -2040.492991 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.81506 -37.09730 -34.74757 -32.62821 -31.55901 -28.38971 -25.07823 -23.69760 -22.86686 -21.81046 -19.57264 -18.84857 -17.24831 -16.60208 -15.78189 -15.47532 -15.26619 -14.70202 -14.67862 -14.45550 -13.77276 -13.43153 -13.07976 -12.75714 -12.69722 -12.24891 -12.08090 -11.84718 -11.76757 -11.56530 -11.22701 -10.85310 -10.65663 -10.57321 -9.10151 -8.32792 -6.37310 1.31524 1.33976 1.45355 2.31466 2.88236 3.00972 3.41952 3.68302 3.86482 3.98827 4.17444 4.23293 4.40394 4.53251 4.54435 4.72801 4.81719 4.82537 4.93669 5.00851 5.06757 5.09682 5.20201 5.29298 5.33892 5.41324 5.47824 5.53694 5.96992 6.55382 6.64916 6.76127 7.27871 8.84059 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.057100 B = 0.008557 C = 0.008090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.251440 B = 3271.400002 C = 3460.237886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.951 3.049 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.531 4.531 8 H 0.037 0.963 9 C 0.180 3.820 10 N -0.686 5.686 11 C 0.083 3.917 12 H 0.051 0.949 13 C -0.142 4.142 14 C -0.084 4.084 15 C -0.150 4.150 16 H 0.123 0.877 17 C -0.184 4.184 18 C -0.135 4.135 19 H 0.116 0.884 20 C -0.075 4.075 21 H 0.268 0.732 22 H 0.019 0.981 23 H -0.014 1.014 24 H 0.337 0.663 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.595 -4.653 -1.652 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.189 4.189 3 Si 0.774 3.226 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.569 4.569 8 H 0.056 0.944 9 C 0.051 3.949 10 N -0.316 5.316 11 C -0.027 4.027 12 H 0.069 0.931 13 C -0.181 4.181 14 C -0.122 4.122 15 C -0.168 4.168 16 H 0.141 0.859 17 C -0.221 4.221 18 C -0.154 4.154 19 H 0.134 0.866 20 C -0.113 4.113 21 H 0.077 0.923 22 H 0.037 0.963 23 H 0.003 0.997 24 H 0.155 0.845 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.377 -4.608 -0.946 18.969 hybrid contribution -0.275 1.014 -0.780 1.308 sum 18.102 -3.594 -1.726 18.535 Atomic orbital electron populations 1.70052 1.08124 1.28272 1.52211 1.25880 0.95660 1.03279 0.94082 0.85666 0.79269 0.78432 0.79272 1.18923 1.20366 1.17720 1.21365 0.91437 0.93495 1.50583 0.94432 1.19711 0.93540 0.87282 0.94365 1.60420 1.06815 1.14513 1.49806 1.21137 0.87288 0.98886 0.95426 0.93088 1.22176 0.97162 1.01717 0.97033 1.20983 0.93267 0.97516 1.00397 1.22276 1.02241 1.01643 0.90607 0.85937 1.22690 1.01943 1.00076 0.97346 1.21327 0.92915 0.97717 1.03394 0.86577 1.20318 0.93365 0.97258 1.00390 0.92274 0.96312 0.99672 0.84549 0.93295 0.90953 0.90056 0.92394 0.87334 0.90271 0.92127 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.07 13.96 21.45 0.30 -59.77 16 2 C 0.01 0.51 5.47 84.66 0.46 0.98 16 3 Si 0.95 44.96 27.47 68.60 1.88 46.84 16 4 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 7 C -0.53 -31.67 9.87 25.60 0.25 -31.42 16 8 H 0.04 2.48 8.06 -2.91 -0.02 2.45 16 9 C 0.18 8.90 4.30 85.56 0.37 9.27 16 10 N -0.69 -29.11 6.27 -499.24 -3.13 -32.24 16 11 C 0.08 2.76 2.05 44.21 0.09 2.85 16 12 H 0.05 1.82 6.77 -2.39 -0.02 1.80 16 13 C -0.14 -4.08 5.29 30.66 0.16 -3.92 16 14 C -0.08 -1.93 5.83 30.46 0.18 -1.75 16 15 C -0.15 -3.03 6.29 -10.98 -0.07 -3.10 16 16 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 17 C -0.18 -3.81 9.48 29.59 0.28 -3.53 16 18 C -0.13 -2.97 5.94 -12.63 -0.07 -3.04 16 19 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 20 C -0.08 -2.13 5.51 29.49 0.16 -1.97 16 21 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 22 H 0.02 0.95 7.12 -2.38 -0.02 0.94 16 23 H -0.01 -0.69 6.76 -2.39 -0.02 -0.71 16 24 H 0.34 14.00 8.48 -89.69 -0.76 13.24 16 25 H 0.05 1.57 7.28 -2.39 -0.02 1.55 16 26 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 27 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.40 8.06 -2.39 -0.02 1.38 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 1.91 7.26 -2.39 -0.02 1.89 16 31 H 0.06 1.70 8.11 -2.39 -0.02 1.68 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -65.39 253.50 1.14 -64.25 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.27 Total: 16.55 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 1.81 Total: -35.63 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -2.83 Total: -92.01 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.84 kcal Total: -65.39 1.14 -64.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403173888.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.756 kcal (2) G-P(sol) polarization free energy of solvation -65.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds