Wall clock time and date at job start Mon Mar 30 2020 03:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.61319 * 34.63294 * 11 10 9 13 13 C 1.53305 * 109.61188 * 274.08598 * 11 10 9 14 14 C 1.50517 * 110.93791 * 168.33398 * 13 11 10 15 15 C 1.52069 * 111.55184 * 50.66140 * 14 13 11 16 16 H 1.08997 * 114.63757 * 197.03513 * 15 14 13 17 17 C 1.49175 * 118.48236 * 53.69504 * 15 14 13 18 18 C 1.52069 * 120.02043 * 342.17751 * 15 14 13 19 19 H 1.09001 * 117.25712 * 214.82379 * 18 15 14 20 20 C 1.52713 * 120.52344 * 4.54606 * 18 15 14 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.00901 * 111.00085 * 303.94554 * 10 9 7 25 25 H 1.08990 * 109.61745 * 285.55665 * 13 11 10 26 26 H 1.08998 * 109.61710 * 46.09962 * 13 11 10 27 27 H 1.09005 * 105.60609 * 292.05777 * 14 13 11 28 28 H 1.08999 * 111.78462 * 173.34035 * 14 13 11 29 29 H 1.08997 * 117.65693 * 141.82115 * 17 15 14 30 30 H 1.08996 * 117.01447 * 357.23639 * 17 15 14 31 31 H 1.09002 * 109.35792 * 216.70620 * 20 18 15 32 32 H 1.09001 * 109.24610 * 97.04415 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 1.5051 -4.9071 -0.0167 12 1 0.5883 -4.8232 -0.6002 13 6 1.1687 -5.3172 1.4217 14 6 0.2123 -6.4793 1.4400 15 6 0.6947 -7.6138 0.5496 16 1 -0.0709 -8.3451 0.2906 17 6 2.0718 -8.1471 0.7602 18 6 1.7496 -7.3507 -0.5136 19 1 1.6704 -7.9113 -1.4450 20 6 2.4079 -5.9776 -0.6300 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.8404 -3.5453 -0.7913 25 1 2.0734 -5.6550 1.9270 26 1 0.7444 -4.4666 1.9550 27 1 -0.7285 -6.0910 1.0499 28 1 0.0542 -6.8572 2.4501 29 1 2.2191 -9.2223 0.6585 30 1 2.6814 -7.6578 1.5198 31 1 2.5789 -5.7469 -1.6815 32 1 3.3620 -5.9908 -0.1031 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403173890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:37 Heat of formation + Delta-G solvation = 5.135617 kcal Electronic energy + Delta-G solvation = -12310.402319 eV Core-core repulsion = 10270.587099 eV Total energy + Delta-G solvation = -2039.815220 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.56618 -35.34894 -32.69422 -31.28285 -29.73885 -26.01398 -24.07894 -22.21606 -21.15510 -20.50853 -18.08656 -16.40601 -16.08158 -14.68843 -14.58203 -13.99303 -13.74680 -13.47894 -12.59718 -12.28031 -12.24333 -11.82483 -11.33308 -11.17213 -11.02555 -10.77423 -10.54026 -10.45805 -10.21409 -9.81144 -9.60801 -9.32742 -9.08433 -8.45995 -7.23797 -6.00897 -4.02544 3.32412 3.39500 3.44881 3.89517 4.44808 4.72998 4.92334 5.02764 5.24445 5.34917 5.36826 5.40796 5.64599 5.75506 5.83846 5.98437 6.00837 6.09651 6.16599 6.25062 6.44986 6.47030 6.58144 6.74757 6.82853 7.32750 7.47003 7.83094 8.17666 8.46067 8.67203 9.07645 9.62350 11.10305 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.079494 B = 0.007239 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.143134 B = 3867.173632 C = 4027.313773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.687 5.687 11 C 0.091 3.909 12 H 0.036 0.964 13 C -0.107 4.107 14 C -0.092 4.092 15 C -0.135 4.135 16 H 0.093 0.907 17 C -0.183 4.183 18 C -0.147 4.147 19 H 0.099 0.901 20 C -0.089 4.089 21 H 0.260 0.740 22 H 0.028 0.972 23 H -0.015 1.015 24 H 0.328 0.672 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.022 -13.377 0.251 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.552 4.552 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.318 5.318 11 C -0.020 4.020 12 H 0.054 0.946 13 C -0.145 4.145 14 C -0.130 4.130 15 C -0.153 4.153 16 H 0.111 0.889 17 C -0.220 4.220 18 C -0.166 4.166 19 H 0.117 0.883 20 C -0.127 4.127 21 H 0.070 0.930 22 H 0.046 0.954 23 H 0.003 0.997 24 H 0.145 0.855 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.956 -13.235 0.940 13.411 hybrid contribution -0.038 0.835 -0.929 1.250 sum 1.917 -12.399 0.011 12.547 Atomic orbital electron populations 1.69981 1.06086 1.26615 1.51128 1.25002 0.94875 0.99374 0.95417 0.86435 0.80073 0.83377 0.77483 1.19661 1.21112 1.21007 1.21255 0.93559 0.90315 1.50029 0.91938 1.19583 0.90606 0.87354 0.95683 1.60673 1.21185 1.01079 1.48823 1.21357 0.95511 0.90024 0.95070 0.94582 1.21085 0.99007 0.96863 0.97556 1.20477 0.99947 0.94050 0.98491 1.21306 0.92643 1.00465 1.00915 0.88872 1.22629 0.99723 0.99235 1.00442 1.22160 1.03662 0.97799 0.92976 0.88305 1.21219 0.98792 0.92052 1.00653 0.93008 0.95388 0.99713 0.85479 0.92781 0.90955 0.92288 0.91429 0.89589 0.88649 0.92085 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.81 9.32 -34.44 -0.32 -15.13 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.21 5.23 -4.98 -0.03 5.19 16 10 N -0.69 -15.13 6.31 -107.89 -0.68 -15.81 16 11 C 0.09 1.67 2.51 -67.61 -0.17 1.50 16 12 H 0.04 0.72 7.78 -51.93 -0.40 0.32 16 13 C -0.11 -1.83 5.13 -27.81 -0.14 -1.97 16 14 C -0.09 -1.30 5.88 -28.45 -0.17 -1.47 16 15 C -0.14 -1.72 5.94 -93.45 -0.55 -2.28 16 16 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.18 -2.18 9.48 -28.28 -0.27 -2.44 16 18 C -0.15 -1.92 6.29 -90.91 -0.57 -2.49 16 19 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 20 C -0.09 -1.35 5.11 -26.94 -0.14 -1.48 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 22 H 0.03 0.81 7.40 -51.93 -0.38 0.42 16 23 H -0.01 -0.43 8.06 -51.93 -0.42 -0.84 16 24 H 0.33 6.90 8.36 -39.29 -0.33 6.57 16 25 H 0.05 0.90 7.09 -51.93 -0.37 0.53 16 26 H 0.07 1.40 7.35 -51.93 -0.38 1.02 16 27 H 0.06 0.86 8.11 -51.93 -0.42 0.44 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.19 7.26 -51.93 -0.38 0.81 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.07 8.05 -51.93 -0.42 0.65 16 LS Contribution 257.07 15.07 3.87 3.87 Total: -1.00 -29.88 257.07 -8.71 -38.59 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.16 Total: 2.03 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -2.46 Total: -19.09 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.06 Total: -42.33 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.88 -8.71 -38.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403173890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.724 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds