Wall clock time and date at job start Mon Mar 30 2020 03:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.61319 * 34.63294 * 11 10 9 13 13 C 1.53305 * 109.61188 * 274.08598 * 11 10 9 14 14 C 1.50517 * 110.93791 * 168.33398 * 13 11 10 15 15 C 1.52069 * 111.55184 * 50.66140 * 14 13 11 16 16 H 1.08997 * 114.63757 * 197.03513 * 15 14 13 17 17 C 1.49175 * 118.48236 * 53.69504 * 15 14 13 18 18 C 1.52069 * 120.02043 * 342.17751 * 15 14 13 19 19 H 1.09001 * 117.25712 * 214.82379 * 18 15 14 20 20 C 1.52713 * 120.52344 * 4.54606 * 18 15 14 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.00901 * 111.00085 * 303.94554 * 10 9 7 25 25 H 1.08990 * 109.61745 * 285.55665 * 13 11 10 26 26 H 1.08998 * 109.61710 * 46.09962 * 13 11 10 27 27 H 1.09005 * 105.60609 * 292.05777 * 14 13 11 28 28 H 1.08999 * 111.78462 * 173.34035 * 14 13 11 29 29 H 1.08997 * 117.65693 * 141.82115 * 17 15 14 30 30 H 1.08996 * 117.01447 * 357.23639 * 17 15 14 31 31 H 1.09002 * 109.35792 * 216.70620 * 20 18 15 32 32 H 1.09001 * 109.24610 * 97.04415 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 1.5051 -4.9071 -0.0167 12 1 0.5883 -4.8232 -0.6002 13 6 1.1687 -5.3172 1.4217 14 6 0.2123 -6.4793 1.4400 15 6 0.6947 -7.6138 0.5496 16 1 -0.0709 -8.3451 0.2906 17 6 2.0718 -8.1471 0.7602 18 6 1.7496 -7.3507 -0.5136 19 1 1.6704 -7.9113 -1.4450 20 6 2.4079 -5.9776 -0.6300 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.8404 -3.5453 -0.7913 25 1 2.0734 -5.6550 1.9270 26 1 0.7444 -4.4666 1.9550 27 1 -0.7285 -6.0910 1.0499 28 1 0.0542 -6.8572 2.4501 29 1 2.2191 -9.2223 0.6585 30 1 2.6814 -7.6578 1.5198 31 1 2.5789 -5.7469 -1.6815 32 1 3.3620 -5.9908 -0.1031 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403173890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:37 Heat of formation + Delta-G solvation = -13.780768 kcal Electronic energy + Delta-G solvation = -12311.222595 eV Core-core repulsion = 10270.587099 eV Total energy + Delta-G solvation = -2040.635496 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.75166 -37.03548 -34.75055 -32.66324 -31.32622 -28.01535 -25.30805 -24.14746 -22.43508 -21.87428 -19.39992 -18.47212 -17.24582 -16.71130 -16.26724 -15.45550 -15.05897 -14.84649 -14.31465 -14.05045 -13.76798 -13.39092 -12.86589 -12.77518 -12.67203 -12.34735 -12.18640 -11.96333 -11.77768 -11.35002 -11.22678 -10.71845 -10.64301 -10.46661 -9.13443 -8.24149 -6.35886 1.40256 1.41290 1.55483 2.39119 2.88965 3.08935 3.41414 3.79901 3.89966 4.01451 4.12690 4.26921 4.34166 4.48781 4.68741 4.76704 4.86313 4.94181 4.97525 5.02735 5.17338 5.21122 5.26543 5.30907 5.38329 5.40251 5.46485 5.63023 6.02610 6.45772 6.73103 6.89197 7.35489 8.87935 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.079494 B = 0.007239 C = 0.006951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.143134 B = 3867.173632 C = 4027.313773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.212 3.788 10 N -0.685 5.685 11 C 0.087 3.913 12 H 0.015 0.985 13 C -0.104 4.104 14 C -0.088 4.088 15 C -0.140 4.140 16 H 0.114 0.886 17 C -0.167 4.167 18 C -0.159 4.159 19 H 0.118 0.882 20 C -0.081 4.081 21 H 0.265 0.735 22 H -0.002 1.002 23 H -0.044 1.044 24 H 0.335 0.665 25 H 0.061 0.939 26 H 0.038 0.962 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.181 -14.364 0.173 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.084 3.916 10 N -0.316 5.316 11 C -0.023 4.023 12 H 0.033 0.967 13 C -0.142 4.142 14 C -0.126 4.126 15 C -0.158 4.158 16 H 0.132 0.868 17 C -0.204 4.204 18 C -0.177 4.177 19 H 0.136 0.864 20 C -0.119 4.119 21 H 0.074 0.926 22 H 0.016 0.984 23 H -0.026 1.026 24 H 0.152 0.848 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.129 0.871 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.125 -14.248 0.860 14.612 hybrid contribution -0.429 1.113 -0.888 1.487 sum 2.696 -13.135 -0.028 13.409 Atomic orbital electron populations 1.70112 1.07912 1.27991 1.51568 1.26010 0.95821 1.03563 0.94496 0.85231 0.78898 0.78017 0.77813 1.18572 1.20163 1.20314 1.21603 0.93851 0.91444 1.50589 0.91673 1.19193 0.90586 0.88974 0.92847 1.60582 1.20439 1.01446 1.49115 1.21481 0.95258 0.89438 0.96122 0.96679 1.21013 1.00007 0.96993 0.96178 1.20447 0.98401 0.93543 1.00173 1.21351 0.93763 1.00231 1.00502 0.86804 1.22679 0.98369 1.00420 0.98913 1.22185 1.04234 0.96800 0.94503 0.86375 1.21125 0.98103 0.92130 1.00567 0.92582 0.98360 1.02647 0.84784 0.92047 0.94307 0.93372 0.89559 0.87071 0.89296 0.91548 0.90815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.91 13.29 21.45 0.28 -57.63 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 3 Si 0.98 45.07 29.54 68.60 2.03 47.09 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.54 -31.60 9.32 25.60 0.24 -31.36 16 8 H 0.07 3.72 7.81 -2.91 -0.02 3.69 16 9 C 0.21 11.89 5.23 85.56 0.45 12.33 16 10 N -0.69 -31.01 6.31 -495.25 -3.12 -34.13 16 11 C 0.09 3.27 2.51 44.98 0.11 3.38 16 12 H 0.02 0.63 7.78 -2.39 -0.02 0.62 16 13 C -0.10 -3.61 5.13 29.89 0.15 -3.45 16 14 C -0.09 -2.41 5.88 29.48 0.17 -2.24 16 15 C -0.14 -3.22 5.94 -12.63 -0.07 -3.29 16 16 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 17 C -0.17 -3.40 9.48 29.59 0.28 -3.12 16 18 C -0.16 -3.73 6.29 -10.98 -0.07 -3.80 16 19 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 20 C -0.08 -2.36 5.11 30.46 0.16 -2.20 16 21 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 22 H 0.00 -0.10 7.40 -2.38 -0.02 -0.12 16 23 H -0.04 -2.67 8.06 -2.39 -0.02 -2.69 16 24 H 0.33 14.25 8.36 -89.69 -0.75 13.50 16 25 H 0.06 2.01 7.09 -2.39 -0.02 2.00 16 26 H 0.04 1.58 7.35 -2.39 -0.02 1.56 16 27 H 0.05 1.41 8.11 -2.38 -0.02 1.39 16 28 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 1.95 7.26 -2.39 -0.02 1.94 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 2.10 8.05 -2.39 -0.02 2.08 16 Total: -1.00 -65.03 257.07 1.40 -63.63 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.34 Total: 14.39 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 1.88 Total: -33.35 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -2.84 Total: -91.76 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.03 1.40 -63.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403173890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.848 kcal (2) G-P(sol) polarization free energy of solvation -65.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds