Wall clock time and date at job start Mon Mar 30 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48501 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47259 * 299.99850 * 3 2 1 6 6 H 1.48495 * 109.47205 * 60.00216 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08991 * 109.61787 * 55.35247 * 11 10 9 13 13 C 1.53307 * 109.61423 * 294.99565 * 11 10 9 14 14 C 1.52880 * 108.57714 * 165.82835 * 13 11 10 15 15 C 1.52719 * 110.15008 * 54.52657 * 14 13 11 16 16 H 1.09007 * 115.38490 * 128.78241 * 15 14 13 17 17 C 1.53643 * 116.03142 * 269.78886 * 15 14 13 18 18 C 1.52060 * 120.52325 * 338.52127 * 15 14 13 19 19 H 1.09008 * 115.92656 * 149.26280 * 18 15 14 20 20 C 1.52072 * 120.02184 * 5.29475 * 18 15 14 21 21 H 0.96996 * 120.00586 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 23 23 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 24 24 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 25 25 H 1.08998 * 109.61512 * 285.55403 * 13 11 10 26 26 H 1.08991 * 109.61684 * 46.10042 * 13 11 10 27 27 H 1.08999 * 109.35567 * 174.72966 * 14 13 11 28 28 H 1.08993 * 109.35922 * 294.32052 * 14 13 11 29 29 H 1.09002 * 117.54338 * 219.06138 * 17 15 14 30 30 H 1.09002 * 117.54084 * 4.31702 * 17 15 14 31 31 H 1.09004 * 109.26288 * 218.03355 * 20 18 15 32 32 H 1.08995 * 109.26941 * 98.56891 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3829 -4.7184 -0.8460 13 6 0.2652 -4.8146 1.3074 14 6 -0.9413 -5.7394 1.1451 15 6 -0.4843 -7.1276 0.7018 16 1 -0.8660 -7.9573 1.2968 17 6 -0.4037 -7.3585 -0.8150 18 6 0.8649 -7.3174 0.0267 19 1 1.3534 -8.2765 0.1991 20 6 1.8223 -6.1431 -0.1041 21 1 -0.4851 0.8400 -0.0004 22 1 0.3556 -2.3881 0.0002 23 1 2.6849 -3.7145 0.8894 24 1 2.6848 -3.7144 -0.8906 25 1 0.8946 -5.1736 2.1216 26 1 -0.0760 -3.8024 1.5239 27 1 -1.4662 -5.8188 2.0971 28 1 -1.6160 -5.3250 0.3962 29 1 -0.7252 -8.3282 -1.1950 30 1 -0.6044 -6.5073 -1.4658 31 1 2.3254 -6.1951 -1.0697 32 1 2.5655 -6.1946 0.6914 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403175246.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:30 Heat of formation + Delta-G solvation = 12.764016 kcal Electronic energy + Delta-G solvation = -12389.697032 eV Core-core repulsion = 10350.212604 eV Total energy + Delta-G solvation = -2039.484428 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.41530 -35.20027 -32.72889 -30.90065 -29.99063 -25.83599 -23.68617 -22.81356 -21.18313 -20.27433 -18.22634 -17.06778 -15.75084 -14.63149 -14.24801 -13.92411 -13.69714 -13.29997 -12.77656 -12.68019 -12.03235 -11.83685 -11.48516 -11.21400 -10.83008 -10.73664 -10.41972 -10.26091 -10.08396 -9.84619 -9.54940 -9.51332 -9.37435 -8.81590 -6.84770 -5.71627 -2.99324 3.46328 3.51784 3.54178 3.89291 4.63560 4.80220 4.95553 5.02020 5.23594 5.35645 5.53192 5.64126 5.66466 5.79251 5.87237 5.91819 5.99751 6.14416 6.24671 6.25737 6.37450 6.42364 6.49121 6.52461 6.64344 6.84904 6.95566 7.06183 7.75429 8.47937 9.58806 10.18730 10.53566 11.51574 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.072877 B = 0.007718 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.119166 B = 3626.853401 C = 3818.355184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.157 3.843 11 C -0.094 4.094 12 H 0.069 0.931 13 C -0.111 4.111 14 C -0.089 4.089 15 C -0.146 4.146 16 H 0.094 0.906 17 C -0.188 4.188 18 C -0.135 4.135 19 H 0.092 0.908 20 C -0.081 4.081 21 H 0.254 0.746 22 H 0.384 0.616 23 H 0.018 0.982 24 H 0.017 0.983 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.004 -13.837 0.844 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.113 4.113 12 H 0.087 0.913 13 C -0.149 4.149 14 C -0.127 4.127 15 C -0.164 4.164 16 H 0.113 0.887 17 C -0.225 4.225 18 C -0.154 4.154 19 H 0.110 0.890 20 C -0.119 4.119 21 H 0.064 0.936 22 H 0.218 0.782 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.147 -13.721 0.840 13.747 hybrid contribution 0.111 0.844 -0.044 0.852 sum 0.258 -12.877 0.796 12.904 Atomic orbital electron populations 1.69669 1.05081 1.25422 1.58186 1.24733 0.95529 0.97643 1.03301 0.86119 0.78775 0.84204 0.77146 1.20601 1.21929 1.21911 1.19306 0.91079 0.84285 1.42091 0.91206 1.42402 1.05888 1.00008 1.89339 1.20663 0.93261 0.85545 0.97558 1.21359 0.97738 0.94092 0.98130 0.91283 1.21592 0.96066 1.00060 0.97185 1.21067 0.98087 0.92637 1.00893 1.22241 1.00548 0.98822 0.94824 0.88736 1.23136 1.02697 1.02560 0.94115 1.21793 0.89886 0.99696 1.03995 0.88988 1.20842 0.96858 0.92524 1.01682 0.93643 0.78229 0.96426 0.96560 0.92415 0.90377 0.92101 0.91711 0.89558 0.88582 0.91790 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 22.83 29.55 -169.99 -5.02 17.81 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.73 -19.13 5.19 -59.91 -0.31 -19.45 16 10 C 0.16 3.31 5.67 -4.04 -0.02 3.29 16 11 C -0.09 -1.62 1.98 -90.53 -0.18 -1.80 16 12 H 0.07 1.25 7.12 -51.93 -0.37 0.88 16 13 C -0.11 -1.85 5.21 -26.63 -0.14 -1.99 16 14 C -0.09 -1.27 5.83 -26.94 -0.16 -1.43 16 15 C -0.15 -1.85 6.19 -90.91 -0.56 -2.41 16 16 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.19 -2.31 9.66 -26.76 -0.26 -2.57 16 18 C -0.14 -1.71 6.00 -91.93 -0.55 -2.26 16 19 H 0.09 1.03 8.14 -51.92 -0.42 0.60 16 20 C -0.08 -1.15 5.22 -27.27 -0.14 -1.29 16 21 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.38 10.46 6.92 -40.82 -0.28 10.18 16 23 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.92 8.04 -51.93 -0.42 0.51 16 26 H 0.08 1.52 6.98 -51.93 -0.36 1.16 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.95 8.06 -51.93 -0.42 0.53 16 29 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.10 1.28 7.27 -51.93 -0.38 0.90 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 256.03 15.07 3.86 3.86 Total: -1.00 -30.23 256.03 -8.17 -38.40 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.16 Total: 5.43 kcal Atomic # 6 Polarization: -15.74 SS G_CDS: -2.26 Total: -18.00 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.41 Total: -47.50 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.23 -8.17 -38.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403175246.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.164 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds