Wall clock time and date at job start Mon Mar 30 2020 02:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48501 * 109.46864 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47259 * 299.99850 * 3 2 1 6 6 H 1.48495 * 109.47205 * 60.00216 * 3 2 1 7 7 C 1.38811 * 119.99972 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99492 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00367 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00002 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46840 * 180.02562 * 10 9 7 12 12 H 1.08991 * 109.61787 * 55.35247 * 11 10 9 13 13 C 1.53307 * 109.61423 * 294.99565 * 11 10 9 14 14 C 1.52880 * 108.57714 * 165.82835 * 13 11 10 15 15 C 1.52719 * 110.15008 * 54.52657 * 14 13 11 16 16 H 1.09007 * 115.38490 * 128.78241 * 15 14 13 17 17 C 1.53643 * 116.03142 * 269.78886 * 15 14 13 18 18 C 1.52060 * 120.52325 * 338.52127 * 15 14 13 19 19 H 1.09008 * 115.92656 * 149.26280 * 18 15 14 20 20 C 1.52072 * 120.02184 * 5.29475 * 18 15 14 21 21 H 0.96996 * 120.00586 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99578 * 359.97438 * 9 7 2 23 23 H 1.09002 * 109.47391 * 59.99677 * 10 9 7 24 24 H 1.09001 * 109.46813 * 299.99734 * 10 9 7 25 25 H 1.08998 * 109.61512 * 285.55403 * 13 11 10 26 26 H 1.08991 * 109.61684 * 46.10042 * 13 11 10 27 27 H 1.08999 * 109.35567 * 174.72966 * 14 13 11 28 28 H 1.08993 * 109.35922 * 294.32052 * 14 13 11 29 29 H 1.09002 * 117.54338 * 219.06138 * 17 15 14 30 30 H 1.09002 * 117.54084 * 4.31702 * 17 15 14 31 31 H 1.09004 * 109.26288 * 218.03355 * 20 18 15 32 32 H 1.08995 * 109.26941 * 98.56891 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 1 0.3829 -4.7184 -0.8460 13 6 0.2652 -4.8146 1.3074 14 6 -0.9413 -5.7394 1.1451 15 6 -0.4843 -7.1276 0.7018 16 1 -0.8660 -7.9573 1.2968 17 6 -0.4037 -7.3585 -0.8150 18 6 0.8649 -7.3174 0.0267 19 1 1.3534 -8.2765 0.1991 20 6 1.8223 -6.1431 -0.1041 21 1 -0.4851 0.8400 -0.0004 22 1 0.3556 -2.3881 0.0002 23 1 2.6849 -3.7145 0.8894 24 1 2.6848 -3.7144 -0.8906 25 1 0.8946 -5.1736 2.1216 26 1 -0.0760 -3.8024 1.5239 27 1 -1.4662 -5.8188 2.0971 28 1 -1.6160 -5.3250 0.3962 29 1 -0.7252 -8.3282 -1.1950 30 1 -0.6044 -6.5073 -1.4658 31 1 2.3254 -6.1951 -1.0697 32 1 2.5655 -6.1946 0.6914 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403175246.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:30 Heat of formation + Delta-G solvation = -4.788246 kcal Electronic energy + Delta-G solvation = -12390.458155 eV Core-core repulsion = 10350.212604 eV Total energy + Delta-G solvation = -2040.245551 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.57429 -36.92800 -34.50459 -32.37636 -31.64762 -27.55437 -25.11397 -24.55609 -22.39223 -21.59810 -19.56432 -19.00723 -16.96726 -16.60297 -15.58557 -15.39960 -15.27247 -14.98334 -14.28966 -14.15024 -13.45959 -13.10915 -13.00625 -12.86056 -12.66247 -12.20681 -12.07509 -11.84346 -11.73266 -11.52114 -11.06760 -10.95803 -10.57987 -10.45409 -8.99902 -7.96031 -5.24893 1.46213 1.47542 1.57809 2.55318 2.90240 3.37165 3.74145 3.78727 3.87187 4.07768 4.15677 4.25387 4.43217 4.50824 4.62643 4.67855 4.79465 4.89986 4.94722 5.07118 5.09187 5.14255 5.22361 5.27712 5.37049 5.45162 5.47300 5.57144 5.59804 6.26629 7.32352 8.09224 8.33195 9.27933 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.072877 B = 0.007718 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.119166 B = 3626.853401 C = 3818.355184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.075 0.925 9 N -0.744 5.744 10 C 0.155 3.845 11 C -0.085 4.085 12 H 0.055 0.945 13 C -0.108 4.108 14 C -0.087 4.087 15 C -0.148 4.148 16 H 0.117 0.883 17 C -0.187 4.187 18 C -0.135 4.135 19 H 0.117 0.883 20 C -0.077 4.077 21 H 0.251 0.749 22 H 0.374 0.626 23 H 0.019 0.981 24 H 0.017 0.983 25 H 0.065 0.935 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.811 -15.269 1.006 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.379 4.379 8 H 0.092 0.908 9 N -0.387 5.387 10 C 0.029 3.971 11 C -0.104 4.104 12 H 0.073 0.927 13 C -0.145 4.145 14 C -0.124 4.124 15 C -0.166 4.166 16 H 0.135 0.865 17 C -0.224 4.224 18 C -0.153 4.153 19 H 0.135 0.865 20 C -0.115 4.115 21 H 0.060 0.940 22 H 0.206 0.794 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.127 0.873 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.984 -15.185 1.000 15.250 hybrid contribution -0.124 1.267 -0.096 1.276 sum 0.860 -13.918 0.905 13.974 Atomic orbital electron populations 1.69831 1.06654 1.26037 1.59583 1.25605 0.96462 1.01195 1.03675 0.85033 0.78172 0.79561 0.76754 1.19055 1.21901 1.21856 1.19713 0.91534 0.85513 1.41178 0.90750 1.42613 1.05647 1.01200 1.89275 1.20837 0.93939 0.85079 0.97274 1.21239 0.96880 0.94396 0.97859 0.92704 1.21506 0.97229 0.98720 0.97086 1.21016 0.96776 0.93259 1.01399 1.22270 1.00818 0.98129 0.95430 0.86468 1.23172 1.02504 1.03049 0.93646 1.21834 0.89620 0.99845 1.04010 0.86474 1.20800 0.97112 0.91192 1.02392 0.93973 0.79394 0.96302 0.96545 0.91643 0.94073 0.90794 0.92881 0.87342 0.90305 0.91216 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.92 13.06 21.65 0.28 -60.64 16 2 C -0.08 -4.57 5.50 84.86 0.47 -4.11 16 3 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.25 -14.40 9.99 84.03 0.84 -13.56 16 8 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.74 -39.78 5.19 -343.45 -1.78 -41.56 16 10 C 0.16 6.57 5.67 86.38 0.49 7.06 16 11 C -0.08 -2.89 1.98 -10.73 -0.02 -2.92 16 12 H 0.05 2.02 7.12 -2.39 -0.02 2.00 16 13 C -0.11 -3.59 5.21 30.66 0.16 -3.43 16 14 C -0.09 -2.39 5.83 30.46 0.18 -2.21 16 15 C -0.15 -3.36 6.19 -10.98 -0.07 -3.43 16 16 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 17 C -0.19 -4.13 9.66 30.58 0.30 -3.83 16 18 C -0.14 -2.99 6.00 -11.64 -0.07 -3.06 16 19 H 0.12 2.09 8.14 -2.38 -0.02 2.08 16 20 C -0.08 -2.03 5.22 30.25 0.16 -1.87 16 21 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 22 H 0.37 21.16 6.92 -92.71 -0.64 20.52 16 23 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 26 H 0.04 1.66 6.98 -2.39 -0.02 1.64 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.56 8.06 -2.39 -0.02 1.54 16 29 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 2.03 7.27 -2.39 -0.02 2.01 16 31 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -64.44 256.03 3.40 -61.05 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 0.44 Total: 23.29 kcal Atomic # 6 Polarization: -33.78 SS G_CDS: 2.43 Total: -31.36 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -1.50 Total: -102.21 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -64.44 3.40 -61.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403175246.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.259 kcal (2) G-P(sol) polarization free energy of solvation -64.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds