Wall clock time and date at job start Mon Mar 30 2020 02:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46725 * 2 1 4 4 N 1.46904 * 109.46819 * 119.99379 * 2 1 3 5 5 C 1.50699 * 109.47520 * 239.99452 * 2 1 3 6 6 C 1.39858 * 126.04055 * 279.97917 * 5 2 1 7 7 N 1.30839 * 108.20186 * 179.97438 * 6 5 2 8 8 N 1.40078 * 108.20616 * 359.97438 * 7 6 5 9 9 C 1.46506 * 126.04097 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46892 * 305.02710 * 9 8 7 11 11 H 1.08002 * 120.00511 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99783 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99573 * 180.27665 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 89.99934 * 14 12 10 16 16 H 1.48499 * 109.47026 * 209.99782 * 14 12 10 17 17 H 1.48496 * 109.47474 * 329.99818 * 14 12 10 18 18 C 1.34951 * 107.92703 * 0.26304 * 8 7 6 19 19 H 1.09001 * 109.47168 * 180.02562 * 1 2 3 20 20 H 1.08995 * 109.47686 * 300.00296 * 1 2 3 21 21 H 1.08998 * 109.46823 * 60.00566 * 1 2 3 22 22 H 1.00901 * 111.00298 * 299.99938 * 4 2 1 23 23 H 1.00896 * 110.99868 * 63.95847 * 4 2 1 24 24 H 1.08005 * 125.90381 * 359.97136 * 6 5 2 25 25 H 1.08992 * 109.47369 * 185.02792 * 9 8 7 26 26 H 1.09005 * 109.46360 * 65.02407 * 9 8 7 27 27 H 0.97004 * 119.99485 * 179.72881 * 13 12 10 28 28 H 1.08001 * 126.12811 * 179.73572 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0324 -0.7105 -1.2304 6 6 2.1220 -2.0956 -1.4018 7 7 2.6022 -2.3294 -2.5962 8 7 2.8331 -1.0985 -3.2237 9 6 3.3692 -0.9063 -4.5735 10 6 4.6842 -1.6315 -4.6997 11 1 5.0812 -2.1803 -3.8585 12 6 5.3806 -1.5943 -5.8892 13 7 6.5255 -2.2317 -6.0010 14 14 4.6936 -0.6457 -7.3444 15 1 5.1859 0.7546 -7.2992 16 1 5.1389 -1.2865 -8.6078 17 1 3.2099 -0.6510 -7.2829 18 6 2.4806 -0.1208 -2.3629 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 1.6961 -0.2348 2.0386 23 1 1.7502 -1.6647 1.1911 24 1 1.8430 -2.8433 -0.6739 25 1 3.5220 0.1574 -4.7557 26 1 2.6641 -1.3027 -5.3042 27 1 7.0135 -2.2088 -6.8390 28 1 2.5429 0.9417 -2.5459 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575623489.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:47 Heat of formation + Delta-G solvation = 70.503088 kcal Electronic energy + Delta-G solvation = -11876.227380 eV Core-core repulsion = 9735.706363 eV Total energy + Delta-G solvation = -2140.521017 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.47746 -35.88371 -33.45020 -31.57545 -29.64493 -28.27230 -27.21707 -22.98684 -22.32960 -20.11271 -19.11290 -16.98073 -16.41027 -15.44071 -14.49268 -14.25780 -14.06188 -13.45570 -13.07789 -13.00587 -12.46383 -12.28328 -12.03792 -11.62259 -11.22581 -10.98582 -10.68309 -10.26247 -9.81262 -9.54461 -8.76290 -8.63832 -8.52826 -7.60852 -6.22051 -4.24338 2.72382 3.15485 3.22625 3.23095 3.43375 3.54083 4.23740 4.81836 5.01812 5.10794 5.39086 5.40853 5.50612 5.61344 5.91529 6.00854 6.11187 6.17291 6.50071 6.68975 6.72949 7.24226 7.30461 7.41887 7.60251 7.82604 8.34981 8.57576 8.88419 9.32733 10.90753 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.071513 B = 0.008117 C = 0.007717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.443602 B = 3448.738600 C = 3627.697341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.173 3.827 3 H 0.078 0.922 4 N -0.840 5.840 5 C -0.251 4.251 6 C 0.029 3.971 7 N -0.276 5.276 8 N -0.326 5.326 9 C 0.230 3.770 10 C -0.534 4.534 11 H 0.086 0.914 12 C 0.076 3.924 13 N -0.887 5.887 14 Si 0.874 3.126 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.051 3.949 19 H 0.053 0.947 20 H 0.048 0.952 21 H 0.059 0.941 22 H 0.334 0.666 23 H 0.338 0.662 24 H 0.166 0.834 25 H 0.046 0.954 26 H 0.041 0.959 27 H 0.268 0.732 28 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.218 5.962 8.719 15.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.060 3.940 3 H 0.096 0.904 4 N -0.369 5.369 5 C -0.264 4.264 6 C -0.156 4.156 7 N -0.098 5.098 8 N -0.106 5.106 9 C 0.111 3.889 10 C -0.572 4.572 11 H 0.104 0.896 12 C -0.128 4.128 13 N -0.524 5.524 14 Si 0.700 3.300 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.189 1.189 18 C -0.099 4.099 19 H 0.072 0.928 20 H 0.067 0.933 21 H 0.078 0.922 22 H 0.146 0.854 23 H 0.151 0.849 24 H 0.183 0.817 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -9.900 5.212 7.288 13.352 hybrid contribution -1.408 0.944 -0.079 1.697 sum -11.308 6.156 7.209 14.756 Atomic orbital electron populations 1.22624 0.98048 1.01792 1.01393 1.19456 0.90759 0.96700 0.87067 0.90435 1.58848 1.67647 1.06709 1.03675 1.19628 1.16318 0.93514 0.96965 1.23394 1.01575 0.95250 0.95410 1.77429 1.19564 1.04954 1.07862 1.48945 1.45232 1.02586 1.13845 1.20015 0.95988 0.97856 0.75076 1.21109 1.02189 1.33119 1.00824 0.89628 1.24838 0.94630 0.95144 0.98147 1.69878 1.14271 1.41713 1.26582 0.86899 0.79908 0.80516 0.82712 1.19729 1.20509 1.18936 1.22177 1.00922 0.95465 0.91345 0.92803 0.93335 0.92234 0.85356 0.84877 0.81688 0.93670 0.94100 0.92175 0.82009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 9.46 37.16 0.35 -1.58 15 2 C 0.17 2.23 3.81 -68.86 -0.26 1.97 15 3 H 0.08 0.98 8.14 -51.93 -0.42 0.56 15 4 N -0.84 -10.00 9.19 -5.65 -0.05 -10.05 15 5 C -0.25 -4.27 5.09 -105.06 -0.54 -4.80 15 6 C 0.03 0.54 11.35 -17.37 -0.20 0.34 15 7 N -0.28 -6.37 12.41 30.62 0.38 -5.99 15 8 N -0.33 -7.40 3.67 -62.54 -0.23 -7.63 15 9 C 0.23 5.53 5.33 -5.19 -0.03 5.51 15 10 C -0.53 -15.37 9.79 -34.44 -0.34 -15.71 15 11 H 0.09 2.80 8.06 -52.49 -0.42 2.38 15 12 C 0.08 2.17 5.47 -17.82 -0.10 2.07 15 13 N -0.89 -26.96 13.96 55.43 0.77 -26.18 15 14 Si 0.87 20.35 27.47 -169.99 -4.67 15.68 15 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 17 H -0.26 -5.84 6.54 56.52 0.37 -5.47 15 18 C 0.05 0.95 11.36 -17.22 -0.20 0.75 15 19 H 0.05 0.59 8.14 -51.93 -0.42 0.17 15 20 H 0.05 0.43 8.14 -51.93 -0.42 0.01 15 21 H 0.06 0.66 8.14 -51.93 -0.42 0.24 15 22 H 0.33 3.10 9.04 -39.29 -0.36 2.75 15 23 H 0.34 3.76 8.04 -39.29 -0.32 3.44 15 24 H 0.17 2.50 7.59 -52.48 -0.40 2.11 15 25 H 0.05 0.99 7.50 -51.93 -0.39 0.60 15 26 H 0.04 0.98 7.20 -51.93 -0.37 0.61 15 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 15 28 H 0.16 2.44 8.06 -52.49 -0.42 2.02 15 LS Contribution 245.45 15.07 3.70 3.70 Total: -1.00 -32.22 245.45 -4.93 -37.15 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -3.54 Total: 4.77 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -1.30 Total: -11.46 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.87 Total: -49.85 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.22 -4.93 -37.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575623489.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.656 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds