Wall clock time and date at job start Mon Mar 30 2020 02:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46725 * 2 1 4 4 N 1.46904 * 109.46819 * 119.99379 * 2 1 3 5 5 C 1.50699 * 109.47520 * 239.99452 * 2 1 3 6 6 C 1.39858 * 126.04055 * 279.97917 * 5 2 1 7 7 N 1.30839 * 108.20186 * 179.97438 * 6 5 2 8 8 N 1.40078 * 108.20616 * 359.97438 * 7 6 5 9 9 C 1.46506 * 126.04097 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46892 * 305.02710 * 9 8 7 11 11 H 1.08002 * 120.00511 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99783 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99573 * 180.27665 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 89.99934 * 14 12 10 16 16 H 1.48499 * 109.47026 * 209.99782 * 14 12 10 17 17 H 1.48496 * 109.47474 * 329.99818 * 14 12 10 18 18 C 1.34951 * 107.92703 * 0.26304 * 8 7 6 19 19 H 1.09001 * 109.47168 * 180.02562 * 1 2 3 20 20 H 1.08995 * 109.47686 * 300.00296 * 1 2 3 21 21 H 1.08998 * 109.46823 * 60.00566 * 1 2 3 22 22 H 1.00901 * 111.00298 * 299.99938 * 4 2 1 23 23 H 1.00896 * 110.99868 * 63.95847 * 4 2 1 24 24 H 1.08005 * 125.90381 * 359.97136 * 6 5 2 25 25 H 1.08992 * 109.47369 * 185.02792 * 9 8 7 26 26 H 1.09005 * 109.46360 * 65.02407 * 9 8 7 27 27 H 0.97004 * 119.99485 * 179.72881 * 13 12 10 28 28 H 1.08001 * 126.12811 * 179.73572 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0196 -0.6924 1.1996 5 6 2.0324 -0.7105 -1.2304 6 6 2.1220 -2.0956 -1.4018 7 7 2.6022 -2.3294 -2.5962 8 7 2.8331 -1.0985 -3.2237 9 6 3.3692 -0.9063 -4.5735 10 6 4.6842 -1.6315 -4.6997 11 1 5.0812 -2.1803 -3.8585 12 6 5.3806 -1.5943 -5.8892 13 7 6.5255 -2.2317 -6.0010 14 14 4.6936 -0.6457 -7.3444 15 1 5.1859 0.7546 -7.2992 16 1 5.1389 -1.2865 -8.6078 17 1 3.2099 -0.6510 -7.2829 18 6 2.4806 -0.1208 -2.3629 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 1.6961 -0.2348 2.0386 23 1 1.7502 -1.6647 1.1911 24 1 1.8430 -2.8433 -0.6739 25 1 3.5220 0.1574 -4.7557 26 1 2.6641 -1.3027 -5.3042 27 1 7.0135 -2.2088 -6.8390 28 1 2.5429 0.9417 -2.5459 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575623489.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:47 Heat of formation + Delta-G solvation = 45.420411 kcal Electronic energy + Delta-G solvation = -11877.315047 eV Core-core repulsion = 9735.706363 eV Total energy + Delta-G solvation = -2141.608684 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.97409 -37.00107 -35.40329 -33.43597 -31.03813 -29.58337 -28.70038 -24.85918 -23.52480 -21.69358 -20.53363 -19.09215 -17.79845 -16.72123 -16.27688 -15.81743 -15.28470 -14.92698 -14.50829 -14.25739 -14.02316 -13.68887 -13.44544 -13.11677 -12.65035 -12.35784 -12.23564 -12.05959 -11.81399 -11.14385 -10.88859 -10.21385 -9.57127 -9.03827 -8.39559 -6.50241 1.21621 1.33855 1.37465 1.47370 1.95622 2.03382 2.27191 2.92533 3.77244 3.97615 4.12613 4.37209 4.39918 4.48194 4.54321 4.68751 4.86819 5.01828 5.11789 5.27672 5.29592 5.45547 5.92045 6.00487 6.38658 6.46360 6.56105 6.80214 7.04840 7.13332 8.77892 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.071513 B = 0.008117 C = 0.007717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.443602 B = 3448.738600 C = 3627.697341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.176 3.824 3 H 0.086 0.914 4 N -0.851 5.851 5 C -0.242 4.242 6 C 0.034 3.966 7 N -0.340 5.340 8 N -0.356 5.356 9 C 0.238 3.762 10 C -0.549 4.549 11 H 0.023 0.977 12 C 0.013 3.987 13 N -0.943 5.943 14 Si 0.959 3.041 15 H -0.252 1.252 16 H -0.279 1.279 17 H -0.241 1.241 18 C 0.042 3.958 19 H 0.050 0.950 20 H 0.072 0.928 21 H 0.055 0.945 22 H 0.352 0.648 23 H 0.342 0.658 24 H 0.194 0.806 25 H 0.076 0.924 26 H 0.042 0.958 27 H 0.273 0.727 28 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.196 8.145 8.997 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.064 3.936 3 H 0.104 0.896 4 N -0.382 5.382 5 C -0.254 4.254 6 C -0.152 4.152 7 N -0.163 5.163 8 N -0.136 5.136 9 C 0.118 3.882 10 C -0.587 4.587 11 H 0.041 0.959 12 C -0.186 4.186 13 N -0.581 5.581 14 Si 0.780 3.220 15 H -0.176 1.176 16 H -0.205 1.205 17 H -0.164 1.164 18 C -0.106 4.106 19 H 0.069 0.931 20 H 0.091 0.909 21 H 0.075 0.925 22 H 0.166 0.834 23 H 0.156 0.844 24 H 0.211 0.789 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -11.904 7.408 7.619 15.958 hybrid contribution -0.771 0.193 0.031 0.795 sum -12.675 7.601 7.651 16.642 Atomic orbital electron populations 1.22524 0.96105 1.01957 1.02456 1.19482 0.92110 0.96440 0.85582 0.89603 1.58788 1.68110 1.07198 1.04126 1.20137 1.14503 0.92815 0.97954 1.23986 0.99598 0.97089 0.94488 1.77349 1.22272 1.06500 1.10156 1.48810 1.47352 1.03381 1.14075 1.19786 0.93249 0.98572 0.76625 1.21245 1.04672 1.33418 0.99378 0.95861 1.25973 0.94622 0.96123 1.01858 1.70060 1.16300 1.43844 1.27932 0.85567 0.80285 0.79168 0.77028 1.17582 1.20458 1.16435 1.22903 1.00110 0.96562 0.91052 0.93110 0.90924 0.92539 0.83416 0.84436 0.78892 0.90630 0.94031 0.91820 0.78586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.46 71.98 0.68 -2.43 15 2 C 0.18 4.02 3.81 44.17 0.17 4.18 15 3 H 0.09 1.85 8.14 -2.39 -0.02 1.83 15 4 N -0.85 -17.85 9.19 -171.80 -1.58 -19.43 15 5 C -0.24 -7.76 5.09 -20.15 -0.10 -7.86 15 6 C 0.03 1.23 11.35 85.23 0.97 2.20 15 7 N -0.34 -16.06 12.41 -57.03 -0.71 -16.77 15 8 N -0.36 -16.12 3.67 -351.78 -1.29 -17.41 15 9 C 0.24 11.37 5.33 85.63 0.46 11.83 15 10 C -0.55 -32.72 9.79 25.60 0.25 -32.47 15 11 H 0.02 1.62 8.06 -2.91 -0.02 1.60 15 12 C 0.01 0.75 5.47 84.66 0.46 1.21 15 13 N -0.94 -59.29 13.96 21.45 0.30 -58.99 15 14 Si 0.96 41.55 27.47 68.60 1.88 43.44 15 15 H -0.25 -10.07 7.11 99.48 0.71 -9.36 15 16 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 17 H -0.24 -9.47 6.54 99.48 0.65 -8.82 15 18 C 0.04 1.48 11.36 83.54 0.95 2.43 15 19 H 0.05 0.96 8.14 -2.39 -0.02 0.94 15 20 H 0.07 1.00 8.14 -2.39 -0.02 0.98 15 21 H 0.06 1.07 8.14 -2.39 -0.02 1.05 15 22 H 0.35 5.38 9.04 -89.69 -0.81 4.57 15 23 H 0.34 6.73 8.04 -89.70 -0.72 6.01 15 24 H 0.19 5.62 7.59 -2.91 -0.02 5.60 15 25 H 0.08 3.12 7.50 -2.39 -0.02 3.11 15 26 H 0.04 1.96 7.20 -2.38 -0.02 1.94 15 27 H 0.27 15.74 8.31 -92.71 -0.77 14.97 15 28 H 0.20 5.32 8.06 -2.91 -0.02 5.30 15 Total: -1.00 -73.67 245.45 2.02 -71.65 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -0.42 Total: 18.41 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 3.83 Total: -20.90 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -3.28 Total: -112.59 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.88 Total: 43.44 kcal Total: -73.67 2.02 -71.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575623489.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.070 kcal (2) G-P(sol) polarization free energy of solvation -73.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds