Wall clock time and date at job start Mon Mar 30 2020 02:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.47603 * 111.00370 * 91.52646 * 10 9 7 12 12 C 1.53620 * 88.08135 * 138.05280 * 11 10 9 13 13 C 1.46794 * 110.99760 * 187.28003 * 10 9 7 14 14 C 1.53690 * 115.02100 * 104.76256 * 13 10 9 15 15 C 1.55031 * 104.02826 * 207.14273 * 14 13 10 16 16 C 1.54943 * 102.83675 * 37.42209 * 15 14 13 17 17 C 1.53300 * 115.26171 * 339.17372 * 13 10 9 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.09001 * 113.45202 * 252.86137 * 11 10 9 22 22 H 1.09006 * 113.44807 * 23.19560 * 11 10 9 23 23 H 1.09002 * 114.20142 * 88.13116 * 12 11 10 24 24 H 1.09001 * 114.20328 * 220.93527 * 12 11 10 25 25 H 1.08997 * 110.51892 * 325.77979 * 14 13 10 26 26 H 1.09003 * 110.51460 * 88.50478 * 14 13 10 27 27 H 1.09003 * 110.73769 * 279.08752 * 15 14 13 28 28 H 1.08999 * 110.89787 * 155.83145 * 15 14 13 29 29 H 1.09007 * 110.47910 * 203.70091 * 16 15 14 30 30 H 1.08994 * 110.59600 * 81.12091 * 16 15 14 31 31 H 1.08999 * 110.07993 * 248.55210 * 17 13 10 32 32 H 1.09002 * 110.08190 * 10.05514 * 17 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 4.0011 -2.5791 0.0106 11 6 4.2178 -3.0684 -1.3650 12 6 5.5207 -3.7173 -0.8738 13 6 5.4574 -2.6216 0.1904 14 6 5.9273 -3.0491 1.5899 15 6 7.3107 -2.3670 1.7464 16 6 7.1015 -1.0000 1.0475 17 6 6.1981 -1.3265 -0.1618 18 1 -0.4849 0.8400 0.0004 19 1 3.8786 -0.6821 -0.8838 20 1 3.8711 -0.6785 0.8962 21 1 3.4696 -3.7907 -1.6914 22 1 4.3763 -2.2696 -2.0896 23 1 5.3972 -4.7274 -0.4831 24 1 6.3570 -3.6200 -1.5661 25 1 5.2356 -2.6894 2.3516 26 1 6.0274 -4.1331 1.6446 27 1 8.0850 -2.9443 1.2412 28 1 7.5591 -2.2285 2.7986 29 1 8.0556 -0.5933 0.7120 30 1 6.6035 -0.2991 1.7174 31 1 6.8063 -1.4741 -1.0542 32 1 5.4840 -0.5194 -0.3252 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593000771.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:37 Heat of formation + Delta-G solvation = 29.545510 kcal Electronic energy + Delta-G solvation = -12860.825986 eV Core-core repulsion = 10822.069258 eV Total energy + Delta-G solvation = -2038.756728 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.43301 -35.26179 -32.80382 -30.22739 -28.37868 -26.53677 -25.74673 -21.70261 -21.39445 -20.32592 -17.51284 -16.92199 -15.35231 -15.32799 -14.72300 -14.20100 -13.76295 -13.06318 -12.73938 -12.38544 -12.31713 -11.33382 -11.30668 -11.10230 -10.96439 -10.82307 -10.76963 -10.35018 -10.21391 -9.99967 -9.64693 -9.60230 -9.20439 -8.56183 -7.84986 -6.03537 -4.00251 3.26888 3.34869 3.36227 4.42224 4.60037 4.83542 4.91891 5.13315 5.25536 5.35043 5.52182 5.69135 5.78804 5.89343 5.92945 6.00137 6.07426 6.12027 6.20816 6.28642 6.33669 6.39049 6.53505 6.56900 6.64211 6.72020 6.85461 7.42755 7.76847 7.96442 8.67665 9.07383 9.58193 11.10050 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.041691 B = 0.012340 C = 0.010694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.452469 B = 2268.436836 C = 2617.576901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.505 4.505 8 H 0.079 0.921 9 C 0.130 3.870 10 N -0.446 5.446 11 C 0.008 3.992 12 C -0.139 4.139 13 C 0.047 3.953 14 C -0.100 4.100 15 C -0.123 4.123 16 C -0.120 4.120 17 C -0.143 4.143 18 H 0.263 0.737 19 H -0.003 1.003 20 H 0.028 0.972 21 H 0.076 0.924 22 H 0.061 0.939 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.402 -3.403 0.010 14.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.699 3.301 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.543 4.543 8 H 0.097 0.903 9 C 0.003 3.997 10 N -0.167 5.167 11 C -0.121 4.121 12 C -0.176 4.176 13 C -0.044 4.044 14 C -0.138 4.138 15 C -0.161 4.161 16 C -0.158 4.158 17 C -0.181 4.181 18 H 0.073 0.927 19 H 0.015 0.985 20 H 0.046 0.954 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.104 0.896 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 13.744 -3.599 0.483 14.215 hybrid contribution 0.736 1.600 -0.586 1.856 sum 14.480 -1.999 -0.103 14.618 Atomic orbital electron populations 1.69896 1.06098 1.26740 1.51293 1.24922 0.94740 0.98769 0.94978 0.86902 0.80447 0.84206 0.78495 1.20283 1.21064 1.19164 1.21007 0.88718 0.94720 1.49873 0.90292 1.20681 0.97460 0.86243 0.95323 1.68850 1.08922 1.22330 1.16592 1.23607 0.96211 0.99239 0.93038 1.23259 0.97978 0.98453 0.97957 1.22827 0.91929 0.94440 0.95236 1.22151 0.95521 0.99603 0.96545 1.22496 0.97553 0.96265 0.99802 1.22317 0.98851 0.97373 0.97247 1.22551 0.98979 0.98566 0.98028 0.92705 0.98547 0.95443 0.90532 0.92096 0.89562 0.91682 0.90938 0.91728 0.91918 0.91996 0.92219 0.91769 0.91937 0.89902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.83 27.47 -169.99 -4.67 17.16 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.50 -14.89 9.93 -34.44 -0.34 -15.24 16 8 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 9 C 0.13 3.23 2.37 -4.98 -0.01 3.22 16 10 N -0.45 -9.73 6.18 -232.61 -1.44 -11.17 16 11 C 0.01 0.16 7.46 -8.55 -0.06 0.09 16 12 C -0.14 -2.14 7.63 -26.47 -0.20 -2.34 16 13 C 0.05 0.82 1.13 -136.64 -0.15 0.67 16 14 C -0.10 -1.57 6.42 -25.30 -0.16 -1.73 16 15 C -0.12 -1.61 6.91 -24.63 -0.17 -1.78 16 16 C -0.12 -1.70 6.84 -24.95 -0.17 -1.88 16 17 C -0.14 -2.35 5.57 -25.82 -0.14 -2.49 16 18 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 19 H 0.00 -0.07 5.46 -51.93 -0.28 -0.36 16 20 H 0.03 0.70 6.78 -51.93 -0.35 0.35 16 21 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 22 H 0.06 1.15 7.41 -51.93 -0.38 0.76 16 23 H 0.09 1.25 7.98 -51.93 -0.41 0.83 16 24 H 0.06 0.87 7.87 -51.93 -0.41 0.46 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.06 0.92 7.83 -51.93 -0.41 0.51 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.91 7.73 -51.93 -0.40 0.51 16 32 H 0.08 1.57 4.97 -51.93 -0.26 1.32 16 LS Contribution 249.33 15.07 3.76 3.76 Total: -1.00 -31.02 249.33 -8.13 -39.15 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -5.04 Total: -1.88 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -1.52 Total: -19.57 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.66 Total: -38.61 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.02 -8.13 -39.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593000771.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.692 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds