Wall clock time and date at job start Mon Mar 30 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00052 * 2 1 4 4 H 1.48503 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47012 * 300.00640 * 3 2 1 6 6 H 1.48499 * 109.46827 * 60.00304 * 3 2 1 7 7 C 1.37883 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99573 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00072 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47217 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00215 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.05422 * 33.51040 * 11 10 9 13 13 C 1.54379 * 110.07123 * 271.96951 * 11 10 9 14 14 C 1.54928 * 104.22578 * 217.21120 * 13 11 10 15 15 C 1.54990 * 102.81943 * 37.71755 * 14 13 11 16 16 C 1.53480 * 110.07128 * 154.99752 * 11 10 9 17 17 C 1.52572 * 121.04787 * 263.43381 * 16 11 10 18 18 C 1.52552 * 121.09231 * 335.15159 * 16 11 10 19 19 H 0.96994 * 119.99933 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.46873 * 60.00178 * 9 7 2 21 21 H 1.09003 * 109.47197 * 300.00335 * 9 7 2 22 22 H 1.00901 * 111.00324 * 56.04395 * 10 9 7 23 23 H 1.09002 * 110.48097 * 335.89905 * 13 11 10 24 24 H 1.08997 * 110.48276 * 98.52602 * 13 11 10 25 25 H 1.08999 * 110.74193 * 156.04851 * 14 13 11 26 26 H 1.08995 * 110.74229 * 279.20338 * 14 13 11 27 27 H 1.08992 * 110.51207 * 203.78798 * 15 14 13 28 28 H 1.09003 * 110.51022 * 81.07607 * 15 14 13 29 29 H 1.08994 * 117.51318 * 3.03844 * 17 16 11 30 30 H 1.09000 * 117.51118 * 217.94387 * 17 16 11 31 31 H 1.09005 * 117.51044 * 142.12387 * 18 16 11 32 32 H 1.09001 * 117.51055 * 357.03464 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 1 0.5769 -4.8285 -0.5668 13 6 1.2085 -5.3494 1.4478 14 6 1.4103 -6.8854 1.4258 15 6 2.6230 -7.0594 0.4765 16 6 2.4030 -5.9927 -0.6105 17 6 2.2734 -6.3886 -2.0782 18 6 3.5149 -5.6361 -1.5922 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.8406 -3.5486 0.7808 23 1 1.9091 -4.8826 2.1402 24 1 0.1819 -5.1035 1.7189 25 1 1.6439 -7.2583 2.4230 26 1 0.5282 -7.3849 1.0253 27 1 2.6245 -8.0571 0.0378 28 1 3.5553 -6.8743 1.0101 29 1 1.5568 -5.8373 -2.6870 30 1 2.3894 -7.4434 -2.3273 31 1 4.4475 -6.1960 -1.5217 32 1 3.6148 -4.5899 -1.8814 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597119556.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:02 Heat of formation + Delta-G solvation = 8.564087 kcal Electronic energy + Delta-G solvation = -12376.933211 eV Core-core repulsion = 10337.266660 eV Total energy + Delta-G solvation = -2039.666550 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.97817 -34.62106 -33.39955 -31.96927 -27.70923 -25.87598 -24.20122 -22.10000 -21.39622 -20.41278 -18.27843 -16.31817 -15.37957 -14.97726 -14.52728 -14.14933 -13.51101 -12.94986 -12.67533 -12.30507 -12.12872 -11.37959 -11.23191 -11.07906 -10.87246 -10.74110 -10.60096 -10.44172 -10.26189 -9.82426 -9.75835 -9.25499 -9.07708 -8.46636 -7.17794 -6.01158 -4.02791 3.31913 3.39111 3.44340 4.19249 4.45689 4.80501 4.98052 5.20443 5.27577 5.34749 5.45611 5.56107 5.69075 5.87339 5.89504 6.01036 6.11268 6.16947 6.24750 6.31389 6.43422 6.47383 6.55681 6.68854 6.81341 7.31773 7.48469 7.82851 8.17330 8.46904 8.68339 9.07566 9.62161 11.09922 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.052962 B = 0.008370 C = 0.007826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.550353 B = 3344.497017 C = 3576.868483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.680 5.680 11 C 0.117 3.883 12 H 0.072 0.928 13 C -0.149 4.149 14 C -0.119 4.119 15 C -0.087 4.087 16 C -0.122 4.122 17 C -0.175 4.175 18 C -0.150 4.150 19 H 0.260 0.740 20 H 0.025 0.975 21 H -0.014 1.014 22 H 0.329 0.671 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.697 -12.264 0.636 12.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.309 5.309 11 C 0.006 3.994 12 H 0.090 0.910 13 C -0.188 4.188 14 C -0.157 4.157 15 C -0.124 4.124 16 C -0.123 4.123 17 C -0.212 4.212 18 C -0.187 4.187 19 H 0.070 0.930 20 H 0.043 0.957 21 H 0.004 0.996 22 H 0.147 0.853 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.624 -12.095 -0.057 12.626 hybrid contribution -0.056 0.931 0.912 1.305 sum 3.568 -11.163 0.855 11.751 Atomic orbital electron populations 1.69974 1.06072 1.26596 1.51150 1.24997 0.94865 0.99350 0.95440 0.86448 0.80084 0.83442 0.77472 1.19668 1.21029 1.21131 1.21246 0.93533 0.90315 1.49972 0.91969 1.19565 0.90651 0.87443 0.95587 1.60630 1.20601 1.00797 1.48877 1.21573 0.95147 0.89553 0.93169 0.91028 1.23104 1.01571 0.95472 0.98658 1.22396 0.98024 0.96604 0.98721 1.21847 0.98136 0.96915 0.95531 1.21735 1.02450 0.98002 0.90098 1.22903 1.02092 0.99753 0.96495 1.22761 0.91510 1.01883 1.02572 0.93028 0.95679 0.99647 0.85334 0.91603 0.91950 0.92179 0.91791 0.92342 0.91600 0.89137 0.89815 0.90153 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.67 9.32 -34.44 -0.32 -14.99 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.19 5.15 5.27 -4.98 -0.03 5.12 16 10 N -0.68 -14.71 5.40 -106.97 -0.58 -15.29 16 11 C 0.12 2.14 3.08 -66.74 -0.21 1.94 16 12 H 0.07 1.42 7.81 -51.93 -0.41 1.02 16 13 C -0.15 -2.41 6.47 -24.99 -0.16 -2.57 16 14 C -0.12 -1.57 6.91 -24.66 -0.17 -1.74 16 15 C -0.09 -1.15 6.58 -25.22 -0.17 -1.31 16 16 C -0.12 -1.91 2.35 -154.25 -0.36 -2.27 16 17 C -0.18 -2.55 10.23 -26.90 -0.28 -2.82 16 18 C -0.15 -2.32 9.82 -26.91 -0.26 -2.58 16 19 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 20 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 21 H -0.01 -0.40 8.14 -51.93 -0.42 -0.82 16 22 H 0.33 6.94 8.10 -39.29 -0.32 6.62 16 23 H 0.07 1.08 7.56 -51.93 -0.39 0.69 16 24 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.11 1.97 7.68 -51.93 -0.40 1.57 16 LS Contribution 263.62 15.07 3.97 3.97 Total: -1.00 -29.42 263.62 -8.22 -37.64 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -5.28 Total: 2.94 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -2.05 Total: -19.75 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.16 Total: -41.71 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.42 -8.22 -37.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597119556.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.204 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds