Wall clock time and date at job start Mon Mar 30 2020 02:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 120.00052 * 2 1 4 4 H 1.48503 * 109.47131 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47012 * 300.00640 * 3 2 1 6 6 H 1.48499 * 109.46827 * 60.00304 * 3 2 1 7 7 C 1.37883 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99573 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00072 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47217 * 180.02562 * 9 7 2 11 11 C 1.46900 * 111.00215 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.05422 * 33.51040 * 11 10 9 13 13 C 1.54379 * 110.07123 * 271.96951 * 11 10 9 14 14 C 1.54928 * 104.22578 * 217.21120 * 13 11 10 15 15 C 1.54990 * 102.81943 * 37.71755 * 14 13 11 16 16 C 1.53480 * 110.07128 * 154.99752 * 11 10 9 17 17 C 1.52572 * 121.04787 * 263.43381 * 16 11 10 18 18 C 1.52552 * 121.09231 * 335.15159 * 16 11 10 19 19 H 0.96994 * 119.99933 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.46873 * 60.00178 * 9 7 2 21 21 H 1.09003 * 109.47197 * 300.00335 * 9 7 2 22 22 H 1.00901 * 111.00324 * 56.04395 * 10 9 7 23 23 H 1.09002 * 110.48097 * 335.89905 * 13 11 10 24 24 H 1.08997 * 110.48276 * 98.52602 * 13 11 10 25 25 H 1.08999 * 110.74193 * 156.04851 * 14 13 11 26 26 H 1.08995 * 110.74229 * 279.20338 * 14 13 11 27 27 H 1.08992 * 110.51207 * 203.78798 * 15 14 13 28 28 H 1.09003 * 110.51022 * 81.07607 * 15 14 13 29 29 H 1.08994 * 117.51318 * 3.03844 * 17 16 11 30 30 H 1.09000 * 117.51118 * 217.94387 * 17 16 11 31 31 H 1.09005 * 117.51044 * 142.12387 * 18 16 11 32 32 H 1.09001 * 117.51055 * 357.03464 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 1 0.5769 -4.8285 -0.5668 13 6 1.2085 -5.3494 1.4478 14 6 1.4103 -6.8854 1.4258 15 6 2.6230 -7.0594 0.4765 16 6 2.4030 -5.9927 -0.6105 17 6 2.2734 -6.3886 -2.0782 18 6 3.5149 -5.6361 -1.5922 19 1 -0.4850 0.8400 0.0004 20 1 0.6241 -2.5567 -0.8903 21 1 0.6247 -2.5571 0.8897 22 1 2.8406 -3.5486 0.7808 23 1 1.9091 -4.8826 2.1402 24 1 0.1819 -5.1035 1.7189 25 1 1.6439 -7.2583 2.4230 26 1 0.5282 -7.3849 1.0253 27 1 2.6245 -8.0571 0.0378 28 1 3.5553 -6.8743 1.0101 29 1 1.5568 -5.8373 -2.6870 30 1 2.3894 -7.4434 -2.3273 31 1 4.4475 -6.1960 -1.5217 32 1 3.6148 -4.5899 -1.8814 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597119556.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:02 Heat of formation + Delta-G solvation = -9.452585 kcal Electronic energy + Delta-G solvation = -12377.714472 eV Core-core repulsion = 10337.266660 eV Total energy + Delta-G solvation = -2040.447812 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.29524 -36.36297 -34.92484 -33.86695 -29.48992 -27.39914 -25.78331 -23.69781 -23.02738 -21.67346 -19.70368 -18.37984 -16.94696 -16.38397 -16.29068 -15.50753 -15.23258 -14.47160 -14.39572 -13.81846 -13.43961 -13.36304 -12.94022 -12.78023 -12.39773 -12.25310 -12.00529 -11.91571 -11.69655 -11.55759 -11.16423 -10.96707 -10.68768 -10.45360 -9.01278 -8.24041 -6.35545 1.39247 1.40180 1.54252 2.38396 2.95216 3.08865 3.58591 3.66307 3.84944 4.07572 4.18282 4.34864 4.41640 4.53379 4.73028 4.86231 4.90841 4.95336 5.05400 5.10012 5.15256 5.18331 5.20517 5.34621 5.39757 5.43056 5.54028 5.62068 6.02302 6.48351 6.74752 6.90773 7.35774 8.87715 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.052962 B = 0.008370 C = 0.007826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.550353 B = 3344.497017 C = 3576.868483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.213 3.787 10 N -0.676 5.676 11 C 0.108 3.892 12 H 0.045 0.955 13 C -0.148 4.148 14 C -0.110 4.110 15 C -0.078 4.078 16 C -0.130 4.130 17 C -0.165 4.165 18 C -0.154 4.154 19 H 0.265 0.735 20 H -0.009 1.009 21 H -0.041 1.041 22 H 0.334 0.666 23 H 0.062 0.938 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 -13.398 0.965 14.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.085 3.915 10 N -0.305 5.305 11 C -0.002 4.002 12 H 0.063 0.937 13 C -0.188 4.188 14 C -0.148 4.148 15 C -0.116 4.116 16 C -0.131 4.131 17 C -0.202 4.202 18 C -0.191 4.191 19 H 0.074 0.926 20 H 0.009 0.991 21 H -0.023 1.023 22 H 0.151 0.849 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.124 0.876 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.121 -13.256 0.274 14.214 hybrid contribution -0.571 1.269 0.783 1.596 sum 4.550 -11.988 1.057 12.866 Atomic orbital electron populations 1.70105 1.07860 1.27920 1.51650 1.25990 0.95806 1.03487 0.94591 0.85262 0.78927 0.78180 0.77780 1.18606 1.20389 1.20187 1.21584 0.93777 0.91452 1.50396 0.91785 1.19159 0.90613 0.89094 0.92652 1.60543 1.19818 1.01030 1.49122 1.21700 0.94712 0.88925 0.94901 0.93696 1.23031 1.00666 0.98443 0.96639 1.22381 0.98593 0.93526 1.00252 1.21847 0.98223 0.97076 0.94415 1.21757 1.02070 0.97850 0.91407 1.22970 1.00823 1.01168 0.95238 1.22722 0.92913 1.00721 1.02720 0.92639 0.99069 1.02315 0.84852 0.91972 0.93230 0.89888 0.90970 0.89758 0.90895 0.90818 0.86624 0.87554 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.81 13.29 21.45 0.28 -57.52 16 2 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 3 Si 0.97 45.16 29.54 68.60 2.03 47.18 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 7 C -0.53 -31.32 9.32 25.60 0.24 -31.08 16 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 9 C 0.21 11.85 5.27 85.56 0.45 12.30 16 10 N -0.68 -30.25 5.40 -492.34 -2.66 -32.91 16 11 C 0.11 4.05 3.08 45.54 0.14 4.19 16 12 H 0.04 1.89 7.81 -2.38 -0.02 1.87 16 13 C -0.15 -4.79 6.47 31.72 0.21 -4.58 16 14 C -0.11 -2.59 6.91 31.93 0.22 -2.37 16 15 C -0.08 -1.80 6.58 31.57 0.21 -1.59 16 16 C -0.13 -3.88 2.35 -52.02 -0.12 -4.00 16 17 C -0.16 -4.51 10.23 30.48 0.31 -4.20 16 18 C -0.15 -4.54 9.82 30.48 0.30 -4.24 16 19 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 20 H -0.01 -0.54 8.07 -2.39 -0.02 -0.56 16 21 H -0.04 -2.44 8.14 -2.39 -0.02 -2.46 16 22 H 0.33 14.35 8.10 -89.69 -0.73 13.63 16 23 H 0.06 2.03 7.56 -2.39 -0.02 2.01 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.08 1.57 8.11 -2.39 -0.02 1.55 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 32 H 0.08 2.86 7.68 -2.39 -0.02 2.84 16 Total: -1.00 -64.59 263.62 2.42 -62.17 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.35 Total: 16.25 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: 2.41 Total: -35.16 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -2.38 Total: -90.44 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -64.59 2.42 -62.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597119556.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.718 kcal (2) G-P(sol) polarization free energy of solvation -64.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds