Wall clock time and date at job start Mon Mar 30 2020 02:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00034 * 2 1 4 4 H 1.48503 * 109.47210 * 239.99848 * 3 2 1 5 5 H 1.48501 * 109.47016 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47203 * 119.99648 * 3 2 1 7 7 C 1.38813 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00803 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99662 * 0.02562 * 7 2 1 10 10 C 1.47663 * 134.56346 * 359.97438 * 9 7 2 11 11 C 1.54026 * 86.19026 * 155.68051 * 10 9 7 12 12 C 1.47098 * 134.56313 * 179.97438 * 9 7 2 13 13 C 1.52614 * 113.60843 * 318.78565 * 12 9 7 14 14 C 1.53156 * 109.25412 * 75.36558 * 13 12 9 15 15 C 1.52974 * 109.41861 * 57.68631 * 14 13 12 16 16 C 1.52978 * 109.70943 * 298.25348 * 15 14 13 17 17 C 1.52618 * 113.61231 * 90.02445 * 12 9 7 18 18 H 0.96997 * 119.99961 * 0.02562 * 1 2 3 19 19 H 1.09002 * 113.75778 * 41.36340 * 10 9 7 20 20 H 1.09001 * 113.85978 * 270.01461 * 10 9 7 21 21 H 1.09005 * 113.76307 * 137.58686 * 11 10 9 22 22 H 1.09005 * 113.76875 * 268.96628 * 11 10 9 23 23 H 1.09002 * 109.51032 * 195.29952 * 13 12 9 24 24 H 1.09007 * 109.50878 * 315.43265 * 13 12 9 25 25 H 1.09007 * 109.48068 * 297.70625 * 14 13 12 26 26 H 1.08997 * 109.48299 * 177.66994 * 14 13 12 27 27 H 1.09000 * 109.43210 * 178.17901 * 15 14 13 28 28 H 1.08999 * 109.43136 * 58.32462 * 15 14 13 29 29 H 1.09000 * 109.47608 * 301.76724 * 16 15 14 30 30 H 1.08999 * 109.47994 * 181.73965 * 16 15 14 31 31 H 1.08998 * 109.51410 * 44.56822 * 17 12 9 32 32 H 1.08994 * 109.50704 * 164.70766 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1036 -2.7594 0.0005 11 6 0.3476 -4.0892 -0.6324 12 6 1.7171 -3.8060 0.0005 13 6 2.8938 -4.1151 -0.9208 14 6 4.1887 -3.6201 -0.2698 15 6 4.3574 -4.2858 1.0972 16 6 3.1924 -3.8953 2.0085 17 6 1.8793 -4.3954 1.3989 18 1 -0.4850 0.8400 -0.0004 19 1 -0.7169 -2.1451 -0.6587 20 1 -0.5304 -2.8700 0.9974 21 1 -0.1541 -4.9645 -0.2199 22 1 0.3559 -4.0765 -1.7223 23 1 2.9563 -5.1912 -1.0831 24 1 2.7506 -3.6101 -1.8762 25 1 4.1419 -2.5383 -0.1439 26 1 5.0362 -3.8759 -0.9057 27 1 5.2949 -3.9584 1.5467 28 1 4.3740 -5.3686 0.9736 29 1 3.1568 -2.8105 2.1083 30 1 3.3322 -4.3465 2.9908 31 1 1.0444 -4.0815 2.0254 32 1 1.8986 -5.4833 1.3354 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000606249530.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:48 Heat of formation + Delta-G solvation = 32.674933 kcal Electronic energy + Delta-G solvation = -13180.806474 eV Core-core repulsion = 11142.185448 eV Total energy + Delta-G solvation = -2038.621026 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.21072 -35.05309 -32.12534 -30.19134 -28.20720 -27.39342 -23.25381 -22.37697 -21.75401 -19.73564 -18.10470 -16.41501 -14.88833 -14.38840 -14.14620 -13.65261 -13.30185 -13.09874 -12.77805 -11.65667 -11.46591 -11.35569 -11.27076 -10.89132 -10.65964 -10.62768 -10.49644 -10.24060 -10.14131 -9.65734 -9.51777 -9.24056 -8.75546 -8.64921 -6.72850 -5.65115 -2.94962 3.44137 3.48431 3.49409 4.52626 5.09972 5.38476 5.41089 5.59375 5.64722 5.78837 5.95094 6.00432 6.17075 6.19843 6.22735 6.27226 6.41074 6.51720 6.56158 6.60129 6.70136 6.83508 6.86500 6.98036 7.05317 7.14716 7.46896 7.62420 7.75426 8.13272 9.17667 9.84551 10.77901 11.52315 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.036506 B = 0.015083 C = 0.012461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.817196 B = 1855.992854 C = 2246.450142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.211 4.211 8 H 0.081 0.919 9 N -0.593 5.593 10 C 0.159 3.841 11 C -0.161 4.161 12 C 0.168 3.832 13 C -0.105 4.105 14 C -0.122 4.122 15 C -0.112 4.112 16 C -0.113 4.113 17 C -0.114 4.114 18 H 0.251 0.749 19 H 0.069 0.931 20 H 0.022 0.978 21 H 0.048 0.952 22 H 0.071 0.929 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.469 -8.555 0.615 9.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.338 4.338 8 H 0.099 0.901 9 N -0.317 5.317 10 C 0.034 3.966 11 C -0.199 4.199 12 C 0.079 3.921 13 C -0.143 4.143 14 C -0.159 4.159 15 C -0.150 4.150 16 C -0.150 4.150 17 C -0.154 4.154 18 H 0.061 0.939 19 H 0.088 0.912 20 H 0.040 0.960 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.485 -8.169 0.602 9.339 hybrid contribution 0.466 0.995 0.219 1.121 sum 4.951 -7.174 0.821 8.755 Atomic orbital electron populations 1.69813 1.04913 1.25048 1.57337 1.24738 0.95563 0.97223 1.03243 0.86322 0.78540 0.83856 0.77828 1.21255 1.21721 1.21388 1.19012 0.90195 0.82065 1.42574 0.90148 1.45998 1.01888 0.98681 1.85181 1.22193 0.88189 0.89671 0.96592 1.23760 0.97570 0.98612 0.99999 1.21184 0.92440 0.86313 0.92137 1.21559 0.94942 0.98813 0.99009 1.21630 0.96753 1.02181 0.95381 1.21455 0.97758 0.99413 0.96337 1.21423 0.94530 1.02248 0.96833 1.21726 0.97397 0.98269 0.98054 0.93865 0.91239 0.95988 0.93354 0.91014 0.93257 0.91874 0.90446 0.93618 0.93208 0.93112 0.90975 0.93641 0.92251 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.80 11.40 55.49 0.63 -27.17 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.90 22.49 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 7 C -0.21 -5.82 10.07 -15.06 -0.15 -5.97 16 8 H 0.08 2.15 5.48 -52.49 -0.29 1.86 16 9 N -0.59 -14.98 3.37 -163.63 -0.55 -15.53 16 10 C 0.16 3.84 7.14 -2.93 -0.02 3.82 16 11 C -0.16 -3.19 7.45 -25.98 -0.19 -3.38 16 12 C 0.17 3.44 0.95 -131.68 -0.13 3.31 16 13 C -0.10 -1.93 5.22 -26.85 -0.14 -2.07 16 14 C -0.12 -2.16 5.84 -26.66 -0.16 -2.31 16 15 C -0.11 -1.80 5.86 -26.76 -0.16 -1.95 16 16 C -0.11 -2.01 5.94 -26.66 -0.16 -2.17 16 17 C -0.11 -2.12 5.26 -26.84 -0.14 -2.26 16 18 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 19 H 0.07 1.85 7.18 -51.93 -0.37 1.48 16 20 H 0.02 0.55 7.73 -51.93 -0.40 0.15 16 21 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 22 H 0.07 1.39 8.09 -51.93 -0.42 0.97 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.08 1.58 5.37 -51.92 -0.28 1.30 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.51 8.09 -51.93 -0.42 1.09 16 30 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.17 7.44 -51.93 -0.39 0.79 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 247.66 15.07 3.73 3.73 Total: -1.00 -29.58 247.66 -7.63 -37.22 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.08 Total: -2.30 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -1.34 Total: -13.42 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.08 Total: -42.69 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.58 -7.63 -37.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606249530.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.890 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds