Wall clock time and date at job start Mon Mar 30 2020 02:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00034 * 2 1 4 4 H 1.48503 * 109.47210 * 239.99848 * 3 2 1 5 5 H 1.48501 * 109.47016 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47203 * 119.99648 * 3 2 1 7 7 C 1.38813 * 120.00398 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00803 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99662 * 0.02562 * 7 2 1 10 10 C 1.47663 * 134.56346 * 359.97438 * 9 7 2 11 11 C 1.54026 * 86.19026 * 155.68051 * 10 9 7 12 12 C 1.47098 * 134.56313 * 179.97438 * 9 7 2 13 13 C 1.52614 * 113.60843 * 318.78565 * 12 9 7 14 14 C 1.53156 * 109.25412 * 75.36558 * 13 12 9 15 15 C 1.52974 * 109.41861 * 57.68631 * 14 13 12 16 16 C 1.52978 * 109.70943 * 298.25348 * 15 14 13 17 17 C 1.52618 * 113.61231 * 90.02445 * 12 9 7 18 18 H 0.96997 * 119.99961 * 0.02562 * 1 2 3 19 19 H 1.09002 * 113.75778 * 41.36340 * 10 9 7 20 20 H 1.09001 * 113.85978 * 270.01461 * 10 9 7 21 21 H 1.09005 * 113.76307 * 137.58686 * 11 10 9 22 22 H 1.09005 * 113.76875 * 268.96628 * 11 10 9 23 23 H 1.09002 * 109.51032 * 195.29952 * 13 12 9 24 24 H 1.09007 * 109.50878 * 315.43265 * 13 12 9 25 25 H 1.09007 * 109.48068 * 297.70625 * 14 13 12 26 26 H 1.08997 * 109.48299 * 177.66994 * 14 13 12 27 27 H 1.09000 * 109.43210 * 178.17901 * 15 14 13 28 28 H 1.08999 * 109.43136 * 58.32462 * 15 14 13 29 29 H 1.09000 * 109.47608 * 301.76724 * 16 15 14 30 30 H 1.08999 * 109.47994 * 181.73965 * 16 15 14 31 31 H 1.08998 * 109.51410 * 44.56822 * 17 12 9 32 32 H 1.08994 * 109.50704 * 164.70766 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1036 -2.7594 0.0005 11 6 0.3476 -4.0892 -0.6324 12 6 1.7171 -3.8060 0.0005 13 6 2.8938 -4.1151 -0.9208 14 6 4.1887 -3.6201 -0.2698 15 6 4.3574 -4.2858 1.0972 16 6 3.1924 -3.8953 2.0085 17 6 1.8793 -4.3954 1.3989 18 1 -0.4850 0.8400 -0.0004 19 1 -0.7169 -2.1451 -0.6587 20 1 -0.5304 -2.8700 0.9974 21 1 -0.1541 -4.9645 -0.2199 22 1 0.3559 -4.0765 -1.7223 23 1 2.9563 -5.1912 -1.0831 24 1 2.7506 -3.6101 -1.8762 25 1 4.1419 -2.5383 -0.1439 26 1 5.0362 -3.8759 -0.9057 27 1 5.2949 -3.9584 1.5467 28 1 4.3740 -5.3686 0.9736 29 1 3.1568 -2.8105 2.1083 30 1 3.3322 -4.3465 2.9908 31 1 1.0444 -4.0815 2.0254 32 1 1.8986 -5.4833 1.3354 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000606249530.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:48 Heat of formation + Delta-G solvation = 15.418749 kcal Electronic energy + Delta-G solvation = -13181.554758 eV Core-core repulsion = 11142.185448 eV Total energy + Delta-G solvation = -2039.369310 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.86038 -36.60640 -34.19707 -31.63394 -30.07304 -29.07839 -25.25210 -23.94863 -23.27546 -21.27835 -19.89192 -18.28729 -16.72665 -16.08213 -15.86160 -15.31154 -14.98821 -14.62351 -14.29538 -13.35114 -13.13863 -13.08760 -12.92751 -12.79487 -12.44561 -12.32902 -12.04394 -11.94366 -11.69138 -11.45603 -11.07961 -10.92878 -10.66512 -10.39404 -8.76777 -7.81244 -5.10199 1.42900 1.45640 1.51242 2.51096 3.34203 3.45074 3.91458 4.06759 4.08824 4.32074 4.48248 4.50376 4.65765 4.76500 4.77525 4.88244 4.92773 4.97801 5.09289 5.13766 5.18899 5.29083 5.37967 5.43203 5.52507 5.58110 5.63690 5.82994 5.93505 6.08626 7.03480 7.74412 8.73510 9.36718 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.036506 B = 0.015083 C = 0.012461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.817196 B = 1855.992854 C = 2246.450142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.079 4.079 3 Si 0.964 3.036 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.281 1.281 7 C -0.203 4.203 8 H 0.086 0.914 9 N -0.618 5.618 10 C 0.150 3.850 11 C -0.139 4.139 12 C 0.164 3.836 13 C -0.102 4.102 14 C -0.122 4.122 15 C -0.106 4.106 16 C -0.112 4.112 17 C -0.111 4.111 18 H 0.243 0.757 19 H 0.034 0.966 20 H 0.011 0.989 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.246 -10.848 0.675 12.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.270 4.270 3 Si 0.794 3.206 4 H -0.204 1.204 5 H -0.225 1.225 6 H -0.208 1.208 7 C -0.332 4.332 8 H 0.103 0.897 9 N -0.343 5.343 10 C 0.025 3.975 11 C -0.177 4.177 12 C 0.076 3.924 13 C -0.141 4.141 14 C -0.160 4.160 15 C -0.143 4.143 16 C -0.150 4.150 17 C -0.151 4.151 18 H 0.051 0.949 19 H 0.052 0.948 20 H 0.028 0.972 21 H 0.102 0.898 22 H 0.094 0.906 23 H 0.104 0.896 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.294 -10.502 0.662 12.262 hybrid contribution -0.075 1.625 0.210 1.640 sum 6.219 -8.878 0.873 10.874 Atomic orbital electron populations 1.70013 1.06298 1.24930 1.59848 1.25511 0.96391 1.00442 1.04697 0.85340 0.77226 0.79942 0.78092 1.20401 1.22478 1.20756 1.19401 0.90708 0.83291 1.39820 0.89693 1.46362 1.02627 1.00230 1.85039 1.22130 0.87642 0.92040 0.95728 1.23587 0.96936 0.97131 1.00036 1.21516 0.93671 0.83333 0.93851 1.21534 0.94309 1.00819 0.97391 1.21607 0.97282 0.99996 0.97090 1.21427 0.97339 1.00931 0.94589 1.21405 0.95170 0.99656 0.98750 1.21684 0.97075 1.00303 0.96015 0.94852 0.94791 0.97164 0.89848 0.90626 0.89640 0.93906 0.94142 0.91164 0.91864 0.90188 0.95251 0.91262 0.94294 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.22 11.40 21.65 0.25 -59.97 16 2 C -0.08 -4.63 5.50 84.86 0.47 -4.17 16 3 Si 0.96 47.48 29.55 68.60 2.03 49.51 16 4 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 6 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.20 -11.45 10.07 84.03 0.85 -10.61 16 8 H 0.09 4.61 5.48 -2.91 -0.02 4.59 16 9 N -0.62 -31.54 3.37 -671.59 -2.26 -33.80 16 10 C 0.15 7.43 7.14 86.47 0.62 8.04 16 11 C -0.14 -5.24 7.45 31.13 0.23 -5.01 16 12 C 0.16 6.37 0.95 3.37 0.00 6.37 16 13 C -0.10 -3.47 5.22 30.52 0.16 -3.31 16 14 C -0.12 -3.98 5.84 30.64 0.18 -3.80 16 15 C -0.11 -2.95 5.86 30.58 0.18 -2.77 16 16 C -0.11 -3.71 5.94 30.64 0.18 -3.53 16 17 C -0.11 -3.80 5.26 30.52 0.16 -3.64 16 18 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 19 H 0.03 1.89 7.18 -2.39 -0.02 1.88 16 20 H 0.01 0.54 7.73 -2.39 -0.02 0.52 16 21 H 0.08 2.58 8.09 -2.38 -0.02 2.56 16 22 H 0.08 2.79 8.09 -2.38 -0.02 2.77 16 23 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 25 H 0.04 1.61 5.37 -2.38 -0.01 1.60 16 26 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.03 1.20 8.09 -2.39 -0.02 1.18 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.04 1.48 7.44 -2.39 -0.02 1.46 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -65.87 247.66 4.11 -61.76 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.07 Total: 4.92 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 3.03 Total: -22.41 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -2.02 Total: -93.78 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -65.87 4.11 -61.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000606249530.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.178 kcal (2) G-P(sol) polarization free energy of solvation -65.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds