Wall clock time and date at job start Mon Mar 30 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99691 * 2 1 4 4 H 1.48501 * 109.46572 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46660 * 299.99481 * 3 2 1 6 6 H 1.48500 * 109.47309 * 59.99837 * 3 2 1 7 7 C 1.37872 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99983 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47302 * 179.97438 * 9 7 2 11 11 C 1.46895 * 111.00070 * 179.97438 * 10 9 7 12 12 C 1.51821 * 108.53719 * 278.99566 * 11 10 9 13 13 C 1.53029 * 110.74849 * 172.45450 * 12 11 10 14 14 C 1.51376 * 108.61350 * 85.76052 * 13 12 11 15 15 C 1.29520 * 120.35839 * 288.11740 * 14 13 12 16 16 C 1.51368 * 120.36383 * 359.97438 * 15 14 13 17 17 C 1.51850 * 108.65150 * 154.99729 * 11 10 9 18 18 H 0.96997 * 119.99857 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47150 * 59.99132 * 9 7 2 20 20 H 1.09006 * 109.46860 * 299.99649 * 9 7 2 21 21 H 1.00901 * 110.99285 * 303.94946 * 10 9 7 22 22 H 1.09008 * 108.60376 * 36.98364 * 11 10 9 23 23 H 1.09006 * 109.20142 * 52.14006 * 12 11 10 24 24 H 1.08997 * 109.23929 * 292.79660 * 12 11 10 25 25 H 1.08996 * 109.61401 * 326.01850 * 13 12 11 26 26 H 1.09007 * 109.61034 * 205.49429 * 13 12 11 27 27 H 1.08000 * 119.81730 * 108.10025 * 14 13 12 28 28 H 1.07998 * 119.81818 * 179.97438 * 15 14 13 29 29 H 1.08999 * 109.61256 * 191.63869 * 16 15 14 30 30 H 1.09011 * 109.60970 * 311.98156 * 16 15 14 31 31 H 1.08999 * 109.22084 * 67.13715 * 17 11 10 32 32 H 1.09001 * 109.21979 * 307.79714 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 6 1.0780 -5.2236 1.4231 13 6 0.1828 -6.4643 1.4566 14 6 1.0634 -7.6937 1.5245 15 6 1.7476 -8.0668 0.4899 16 6 1.6750 -7.2785 -0.8003 17 6 2.4199 -5.9557 -0.6070 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5570 -0.8896 20 1 0.6241 -2.5567 0.8904 21 1 2.8405 -3.5486 -0.7809 22 1 0.6140 -4.8195 -0.6201 23 1 0.5293 -4.3741 1.8301 24 1 1.9635 -5.4033 2.0328 25 1 -0.4267 -6.5002 0.5537 26 1 -0.4616 -6.4269 2.3350 27 1 1.1216 -8.2627 2.4406 28 1 2.3733 -8.9451 0.5482 29 1 2.1426 -7.8478 -1.6036 30 1 0.6324 -7.0814 -1.0504 31 1 3.2712 -6.1165 0.0545 32 1 2.7792 -5.6016 -1.5732 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000642876254.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:52 Heat of formation + Delta-G solvation = -1.938411 kcal Electronic energy + Delta-G solvation = -12289.556845 eV Core-core repulsion = 10249.434872 eV Total energy + Delta-G solvation = -2040.121973 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.61150 -34.92780 -32.58682 -31.56389 -30.03482 -26.39316 -23.83895 -23.72253 -21.31783 -19.71743 -17.81966 -16.53064 -15.84301 -14.94224 -14.66590 -14.00042 -13.60839 -13.15929 -12.74275 -12.43191 -12.10638 -11.79913 -11.44648 -11.25989 -11.07067 -10.85472 -10.54362 -10.26170 -10.19618 -10.01259 -9.73477 -9.11975 -8.80758 -8.45558 -7.23068 -6.00981 -4.02601 2.46004 3.32291 3.39351 3.44778 4.44912 4.87718 5.05010 5.09733 5.34860 5.36211 5.41679 5.55318 5.72229 5.80008 5.86760 6.04153 6.10885 6.17972 6.24656 6.51179 6.53799 6.66527 6.81658 6.91855 7.07739 7.32464 7.46774 7.82997 8.17546 8.46479 8.67323 9.07619 9.62331 11.10193 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.074440 B = 0.007291 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.053619 B = 3839.495890 C = 4007.359571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.691 5.691 11 C 0.089 3.911 12 C -0.099 4.099 13 C -0.093 4.093 14 C -0.152 4.152 15 C -0.163 4.163 16 C -0.089 4.089 17 C -0.112 4.112 18 H 0.260 0.740 19 H -0.016 1.016 20 H 0.029 0.971 21 H 0.328 0.672 22 H 0.027 0.973 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 -13.272 0.182 13.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.322 5.322 11 C -0.022 4.022 12 C -0.137 4.137 13 C -0.131 4.131 14 C -0.170 4.170 15 C -0.181 4.181 16 C -0.127 4.127 17 C -0.150 4.150 18 H 0.070 0.930 19 H 0.002 0.998 20 H 0.047 0.953 21 H 0.145 0.855 22 H 0.045 0.955 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.805 -13.112 0.865 13.264 hybrid contribution 0.050 0.881 -0.835 1.214 sum 1.855 -12.232 0.030 12.371 Atomic orbital electron populations 1.69978 1.06075 1.26613 1.51163 1.24999 0.94876 0.99365 0.95420 0.86438 0.80077 0.83393 0.77484 1.19667 1.21117 1.20997 1.21257 0.93561 0.90338 1.49985 0.91957 1.19597 0.90627 0.87418 0.95654 1.60712 1.21273 1.01242 1.48963 1.21076 0.95177 0.90518 0.95399 1.21242 0.99187 0.96080 0.97158 1.20861 0.97213 0.93183 1.01859 1.22581 0.98697 0.97694 0.98031 1.22486 1.00194 0.99657 0.95766 1.20784 1.01003 0.95572 0.95311 1.21459 0.98896 0.94004 1.00593 0.93013 0.99778 0.95323 0.85527 0.95491 0.91258 0.91815 0.91367 0.91807 0.87957 0.87997 0.91931 0.91225 0.91396 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -14.82 9.32 -34.44 -0.32 -15.14 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.19 5.20 -4.97 -0.03 5.16 16 10 N -0.69 -15.24 6.25 -109.25 -0.68 -15.92 16 11 C 0.09 1.62 2.05 -68.90 -0.14 1.48 16 12 C -0.10 -1.71 5.14 -27.31 -0.14 -1.85 16 13 C -0.09 -1.32 5.62 -27.54 -0.15 -1.47 16 14 C -0.15 -1.92 9.34 -35.28 -0.33 -2.25 16 15 C -0.16 -1.99 9.34 -35.29 -0.33 -2.32 16 16 C -0.09 -1.13 5.61 -27.53 -0.15 -1.28 16 17 C -0.11 -1.67 4.98 -27.29 -0.14 -1.80 16 18 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 19 H -0.02 -0.44 8.04 -51.93 -0.42 -0.86 16 20 H 0.03 0.82 6.97 -51.93 -0.36 0.46 16 21 H 0.33 6.91 8.15 -39.29 -0.32 6.59 16 22 H 0.03 0.53 7.54 -51.92 -0.39 0.14 16 23 H 0.07 1.36 6.91 -51.93 -0.36 1.00 16 24 H 0.06 1.11 7.86 -51.93 -0.41 0.70 16 25 H 0.07 0.97 6.69 -51.93 -0.35 0.62 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 28 H 0.10 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.91 6.70 -51.92 -0.35 0.56 16 31 H 0.07 1.03 7.86 -51.93 -0.41 0.62 16 32 H 0.06 0.86 7.89 -51.93 -0.41 0.45 16 LS Contribution 255.58 15.07 3.85 3.85 Total: -1.00 -29.98 255.58 -7.95 -37.93 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.01 Total: 1.69 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -1.83 Total: -18.00 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.05 Total: -42.42 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.98 -7.95 -37.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642876254.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.995 kcal (2) G-P(sol) polarization free energy of solvation -29.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds