Wall clock time and date at job start Mon Mar 30 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99691 * 2 1 4 4 H 1.48501 * 109.46572 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46660 * 299.99481 * 3 2 1 6 6 H 1.48500 * 109.47309 * 59.99837 * 3 2 1 7 7 C 1.37872 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00142 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99983 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47302 * 179.97438 * 9 7 2 11 11 C 1.46895 * 111.00070 * 179.97438 * 10 9 7 12 12 C 1.51821 * 108.53719 * 278.99566 * 11 10 9 13 13 C 1.53029 * 110.74849 * 172.45450 * 12 11 10 14 14 C 1.51376 * 108.61350 * 85.76052 * 13 12 11 15 15 C 1.29520 * 120.35839 * 288.11740 * 14 13 12 16 16 C 1.51368 * 120.36383 * 359.97438 * 15 14 13 17 17 C 1.51850 * 108.65150 * 154.99729 * 11 10 9 18 18 H 0.96997 * 119.99857 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47150 * 59.99132 * 9 7 2 20 20 H 1.09006 * 109.46860 * 299.99649 * 9 7 2 21 21 H 1.00901 * 110.99285 * 303.94946 * 10 9 7 22 22 H 1.09008 * 108.60376 * 36.98364 * 11 10 9 23 23 H 1.09006 * 109.20142 * 52.14006 * 12 11 10 24 24 H 1.08997 * 109.23929 * 292.79660 * 12 11 10 25 25 H 1.08996 * 109.61401 * 326.01850 * 13 12 11 26 26 H 1.09007 * 109.61034 * 205.49429 * 13 12 11 27 27 H 1.08000 * 119.81730 * 108.10025 * 14 13 12 28 28 H 1.07998 * 119.81818 * 179.97438 * 15 14 13 29 29 H 1.08999 * 109.61256 * 191.63869 * 16 15 14 30 30 H 1.09011 * 109.60970 * 311.98156 * 16 15 14 31 31 H 1.08999 * 109.22084 * 67.13715 * 17 11 10 32 32 H 1.09001 * 109.21979 * 307.79714 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5054 -4.9070 0.0011 12 6 1.0780 -5.2236 1.4231 13 6 0.1828 -6.4643 1.4566 14 6 1.0634 -7.6937 1.5245 15 6 1.7476 -8.0668 0.4899 16 6 1.6750 -7.2785 -0.8003 17 6 2.4199 -5.9557 -0.6070 18 1 -0.4850 0.8400 -0.0004 19 1 0.6247 -2.5570 -0.8896 20 1 0.6241 -2.5567 0.8904 21 1 2.8405 -3.5486 -0.7809 22 1 0.6140 -4.8195 -0.6201 23 1 0.5293 -4.3741 1.8301 24 1 1.9635 -5.4033 2.0328 25 1 -0.4267 -6.5002 0.5537 26 1 -0.4616 -6.4269 2.3350 27 1 1.1216 -8.2627 2.4406 28 1 2.3733 -8.9451 0.5482 29 1 2.1426 -7.8478 -1.6036 30 1 0.6324 -7.0814 -1.0504 31 1 3.2712 -6.1165 0.0545 32 1 2.7792 -5.6016 -1.5732 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000642876254.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:52 Heat of formation + Delta-G solvation = -21.144819 kcal Electronic energy + Delta-G solvation = -12290.389697 eV Core-core repulsion = 10249.434872 eV Total energy + Delta-G solvation = -2040.954825 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.92412 -36.57680 -34.62158 -32.75069 -31.65708 -28.31650 -25.35578 -24.98929 -23.24593 -21.17304 -18.87146 -18.58037 -17.08128 -16.70558 -16.48271 -15.55560 -15.06001 -14.73608 -14.05203 -13.94652 -13.81906 -13.46968 -13.19481 -12.74845 -12.56690 -12.50442 -12.13845 -11.92031 -11.73226 -11.35084 -11.20353 -11.15125 -10.67508 -9.88066 -9.12609 -8.24099 -6.35765 1.39982 1.40977 1.48217 1.55130 2.39024 3.08875 3.46784 3.77754 3.94180 4.24786 4.26857 4.31086 4.51392 4.57701 4.66083 4.70739 4.90954 4.95040 5.07237 5.09286 5.24300 5.27587 5.30018 5.33771 5.46064 5.63177 5.83917 6.02867 6.10914 6.46522 6.73424 6.89598 7.35592 8.87866 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.074440 B = 0.007291 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.053619 B = 3839.495890 C = 4007.359571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.537 4.537 8 H 0.064 0.936 9 C 0.211 3.789 10 N -0.691 5.691 11 C 0.088 3.912 12 C -0.094 4.094 13 C -0.089 4.089 14 C -0.161 4.161 15 C -0.158 4.158 16 C -0.088 4.088 17 C -0.104 4.104 18 H 0.265 0.735 19 H -0.044 1.044 20 H 0.000 1.000 21 H 0.334 0.666 22 H 0.010 0.990 23 H 0.034 0.966 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.123 0.877 28 H 0.127 0.873 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.190 -14.165 0.078 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.082 0.918 9 C 0.083 3.917 10 N -0.321 5.321 11 C -0.022 4.022 12 C -0.133 4.133 13 C -0.127 4.127 14 C -0.179 4.179 15 C -0.176 4.176 16 C -0.126 4.126 17 C -0.142 4.142 18 H 0.074 0.926 19 H -0.027 1.027 20 H 0.018 0.982 21 H 0.152 0.848 22 H 0.028 0.972 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.141 0.859 28 H 0.145 0.855 29 H 0.106 0.894 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.134 -14.031 0.759 14.397 hybrid contribution -0.391 1.126 -0.809 1.440 sum 2.743 -12.905 -0.050 13.194 Atomic orbital electron populations 1.70108 1.07878 1.27978 1.51586 1.25999 0.95822 1.03526 0.94512 0.85243 0.78892 0.78074 0.77822 1.18618 1.20158 1.20303 1.21606 0.93830 0.91511 1.50561 0.91753 1.19211 0.90607 0.88983 0.92883 1.60634 1.20583 1.01677 1.49255 1.21249 0.95094 0.89808 0.96061 1.21181 0.99355 0.96565 0.96169 1.20780 0.97080 0.92534 1.02262 1.22640 0.98722 0.97167 0.99331 1.22703 0.99867 1.00059 0.94964 1.20787 1.00528 0.94500 0.96749 1.21385 0.98244 0.94069 1.00471 0.92588 1.02682 0.98189 0.84847 0.97240 0.94697 0.91860 0.91704 0.90782 0.85939 0.85481 0.89418 0.91881 0.91139 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.80 13.29 21.45 0.28 -57.52 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.43 16 3 Si 0.98 45.08 29.54 68.60 2.03 47.11 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.54 -31.62 9.32 25.60 0.24 -31.38 16 8 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 9 C 0.21 11.80 5.20 85.56 0.45 12.25 16 10 N -0.69 -31.19 6.25 -499.55 -3.12 -34.31 16 11 C 0.09 3.25 2.05 44.15 0.09 3.34 16 12 C -0.09 -3.34 5.14 30.22 0.16 -3.18 16 13 C -0.09 -2.45 5.62 30.07 0.17 -2.28 16 14 C -0.16 -3.67 9.34 27.38 0.26 -3.42 16 15 C -0.16 -3.36 9.34 27.37 0.26 -3.11 16 16 C -0.09 -2.02 5.61 30.08 0.17 -1.85 16 17 C -0.10 -2.96 4.98 30.23 0.15 -2.81 16 18 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 19 H -0.04 -2.68 8.04 -2.39 -0.02 -2.70 16 20 H 0.00 0.00 6.97 -2.38 -0.02 -0.01 16 21 H 0.33 14.21 8.15 -89.69 -0.73 13.48 16 22 H 0.01 0.39 7.54 -2.38 -0.02 0.37 16 23 H 0.03 1.44 6.91 -2.38 -0.02 1.42 16 24 H 0.06 2.21 7.86 -2.39 -0.02 2.19 16 25 H 0.06 1.82 6.69 -2.39 -0.02 1.81 16 26 H 0.07 1.87 8.14 -2.38 -0.02 1.86 16 27 H 0.12 2.33 8.06 -2.91 -0.02 2.30 16 28 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.55 6.70 -2.38 -0.02 1.54 16 31 H 0.07 1.99 7.86 -2.39 -0.02 1.97 16 32 H 0.07 1.79 7.89 -2.39 -0.02 1.77 16 Total: -1.00 -65.08 255.58 1.93 -63.15 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: 0.35 Total: 13.58 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 2.39 Total: -32.01 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -2.84 Total: -91.83 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -65.08 1.93 -63.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000642876254.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.001 kcal (2) G-P(sol) polarization free energy of solvation -65.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds