Wall clock time and date at job start Mon Mar 30 2020 02:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99676 * 2 1 4 4 H 1.48498 * 109.47513 * 240.00245 * 3 2 1 5 5 H 1.48503 * 109.47239 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46884 * 120.00250 * 3 2 1 7 7 C 1.38811 * 120.00239 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00072 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.47437 * 134.20231 * 359.97438 * 9 7 2 11 11 C 1.53802 * 86.64565 * 155.99404 * 10 9 7 12 12 H 1.08995 * 114.44752 * 138.56141 * 11 10 9 13 13 C 1.51501 * 113.52994 * 271.08642 * 11 10 9 14 14 C 1.50910 * 112.65528 * 180.94959 * 13 11 10 15 15 C 1.50086 * 114.93106 * 273.86822 * 14 13 11 16 16 C 1.55381 * 107.16988 * 62.90899 * 15 14 13 17 17 C 1.53380 * 106.48360 * 283.69796 * 16 15 14 18 18 C 1.49594 * 134.26383 * 179.97438 * 9 7 2 19 19 H 1.08997 * 113.99453 * 89.62366 * 18 9 7 20 20 H 0.96993 * 120.00419 * 359.97438 * 1 2 3 21 21 H 1.08997 * 113.68819 * 41.55453 * 10 9 7 22 22 H 1.09005 * 113.76873 * 270.43703 * 10 9 7 23 23 H 1.08993 * 108.84610 * 60.12243 * 13 11 10 24 24 H 1.09005 * 108.83768 * 301.76421 * 13 11 10 25 25 H 1.09006 * 108.39551 * 152.45972 * 14 13 11 26 26 H 1.08997 * 108.25860 * 35.17777 * 14 13 11 27 27 H 1.09002 * 109.93018 * 182.35134 * 15 14 13 28 28 H 1.08996 * 109.92576 * 303.47190 * 15 14 13 29 29 H 1.09000 * 110.05200 * 42.86282 * 16 15 14 30 30 H 1.08999 * 110.04994 * 164.38780 * 16 15 14 31 31 H 1.08994 * 109.27404 * 342.68317 * 17 16 15 32 32 H 1.09005 * 109.08852 * 223.23172 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1036 -2.7498 0.0004 11 6 0.3273 -4.0871 -0.6252 12 1 -0.1905 -4.9594 -0.2262 13 6 0.3822 -4.0569 -2.1389 14 6 0.7847 -5.3847 -2.7325 15 6 2.2652 -5.6059 -2.8423 16 6 2.8380 -5.6010 -1.3979 17 6 2.8831 -4.1339 -0.9526 18 6 1.7314 -3.8279 -0.0015 19 1 1.8587 -4.2532 0.9940 20 1 -0.4850 0.8399 0.0004 21 1 -0.7119 -2.1329 -0.6609 22 1 -0.5306 -2.8507 0.9983 23 1 1.1015 -3.2995 -2.4500 24 1 -0.6013 -3.7838 -2.5214 25 1 0.3508 -5.4615 -3.7296 26 1 0.3636 -6.1771 -2.1138 27 1 2.4631 -6.5669 -3.3172 28 1 2.7185 -4.8037 -3.4244 29 1 2.1867 -6.1714 -0.7356 30 1 3.8421 -6.0251 -1.3927 31 1 2.8083 -3.4896 -1.8285 32 1 3.8291 -3.9443 -0.4454 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685968133.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:09 Heat of formation + Delta-G solvation = 17.768604 kcal Electronic energy + Delta-G solvation = -12988.744879 eV Core-core repulsion = 10949.477466 eV Total energy + Delta-G solvation = -2039.267413 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.76796 -36.65085 -34.08838 -32.75444 -30.00604 -28.13541 -25.88269 -23.90650 -22.69211 -21.41275 -19.65715 -18.28579 -16.91394 -16.60924 -15.92706 -15.76969 -14.85382 -14.37855 -13.83748 -13.55694 -13.50075 -13.26376 -12.87456 -12.79169 -12.53723 -12.25796 -11.89560 -11.80139 -11.45656 -11.21016 -11.05727 -10.88898 -10.75847 -10.66635 -8.84690 -7.85648 -5.16900 1.42143 1.45798 1.51762 2.47813 3.29153 3.37995 3.76644 3.97767 4.09361 4.29135 4.39182 4.44982 4.62883 4.65779 4.77958 4.89689 4.94865 5.05494 5.16074 5.29586 5.32082 5.34018 5.38173 5.43295 5.50322 5.54287 5.62146 5.67762 5.96416 6.01554 6.97686 7.66001 8.64956 9.30970 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.051710 B = 0.011285 C = 0.010496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.351931 B = 2480.576672 C = 2666.992596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.073 4.073 3 Si 0.974 3.026 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.223 4.223 8 H 0.077 0.923 9 N -0.634 5.634 10 C 0.157 3.843 11 C -0.103 4.103 12 H 0.091 0.909 13 C -0.087 4.087 14 C -0.109 4.109 15 C -0.114 4.114 16 C -0.106 4.106 17 C -0.112 4.112 18 C 0.136 3.864 19 H 0.050 0.950 20 H 0.246 0.754 21 H 0.037 0.963 22 H 0.007 0.993 23 H 0.039 0.961 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.180 -12.301 -4.587 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.266 4.266 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.095 0.905 9 N -0.361 5.361 10 C 0.032 3.968 11 C -0.122 4.122 12 H 0.109 0.891 13 C -0.125 4.125 14 C -0.146 4.146 15 C -0.151 4.151 16 C -0.144 4.144 17 C -0.150 4.150 18 C 0.031 3.969 19 H 0.067 0.933 20 H 0.054 0.946 21 H 0.056 0.944 22 H 0.025 0.975 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.215 -11.961 -4.595 13.210 hybrid contribution 0.150 1.630 0.492 1.709 sum 3.365 -10.331 -4.103 11.615 Atomic orbital electron populations 1.70020 1.06357 1.25274 1.59018 1.25569 0.96519 1.00624 1.03846 0.85216 0.77169 0.79235 0.78149 1.20301 1.22096 1.20587 1.19328 0.90614 0.83709 1.41479 0.90520 1.46862 1.03015 1.00258 1.85954 1.22095 0.87093 0.92035 0.95617 1.23087 0.96164 0.96788 0.96183 0.89122 1.20506 1.00271 0.98353 0.93374 1.20570 0.96909 0.96282 1.00831 1.21603 0.95365 1.01873 0.96240 1.22066 1.01498 0.94067 0.96787 1.21748 0.96747 0.97873 0.98649 1.23207 0.94564 0.83181 0.95922 0.93290 0.94557 0.94415 0.97530 0.94200 0.93373 0.91829 0.91132 0.89605 0.93068 0.90805 0.90748 0.93058 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.24 11.35 21.65 0.25 -59.99 16 2 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 3 Si 0.97 47.67 29.55 68.60 2.03 49.70 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.22 -13.00 10.55 84.03 0.89 -12.12 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.63 -33.80 3.37 -677.79 -2.28 -36.08 16 10 C 0.16 7.91 7.02 86.47 0.61 8.52 16 11 C -0.10 -3.93 3.77 -10.03 -0.04 -3.96 16 12 H 0.09 2.89 8.05 -2.39 -0.02 2.87 16 13 C -0.09 -3.06 4.66 29.42 0.14 -2.92 16 14 C -0.11 -2.76 5.14 28.98 0.15 -2.61 16 15 C -0.11 -2.66 5.83 30.47 0.18 -2.48 16 16 C -0.11 -2.68 5.85 31.54 0.18 -2.50 16 17 C -0.11 -3.93 5.07 30.55 0.15 -3.77 16 18 C 0.14 5.59 4.36 45.19 0.20 5.78 16 19 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 20 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 21 H 0.04 2.13 7.10 -2.39 -0.02 2.11 16 22 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 23 H 0.04 1.66 6.07 -2.39 -0.01 1.65 16 24 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.07 1.58 7.71 -2.39 -0.02 1.57 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 1.33 7.56 -2.39 -0.02 1.31 16 29 H 0.07 1.76 7.40 -2.39 -0.02 1.74 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 2.05 5.60 -2.39 -0.01 2.03 16 32 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -67.11 245.98 3.98 -63.12 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: 1.07 Total: 3.22 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 2.92 Total: -19.96 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -2.04 Total: -96.08 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 2.03 Total: 49.70 kcal Total: -67.11 3.98 -63.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968133.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.890 kcal (2) G-P(sol) polarization free energy of solvation -67.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds