Wall clock time and date at job start Mon Mar 30 2020 02:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46826 * 135.57462 * 359.35632 * 9 7 2 11 11 C 1.52819 * 88.82505 * 205.76874 * 10 9 7 12 12 H 1.08996 * 115.40765 * 221.41335 * 11 10 9 13 13 C 1.51280 * 114.42167 * 86.75361 * 11 10 9 14 14 C 1.51148 * 112.43677 * 181.34119 * 13 11 10 15 15 C 1.50028 * 114.86154 * 85.42888 * 14 13 11 16 16 C 1.55344 * 107.11174 * 297.45369 * 15 14 13 17 17 C 1.53344 * 106.31337 * 76.90374 * 16 15 14 18 18 C 1.47163 * 135.57055 * 179.72130 * 9 7 2 19 19 H 1.09001 * 113.90526 * 270.73236 * 18 9 7 20 20 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 21 21 H 1.08994 * 113.34478 * 320.69737 * 10 9 7 22 22 H 1.09006 * 113.34831 * 90.76238 * 10 9 7 23 23 H 1.09000 * 108.88452 * 60.57684 * 13 11 10 24 24 H 1.09000 * 108.80959 * 302.04572 * 13 11 10 25 25 H 1.08999 * 108.40468 * 324.02785 * 14 13 11 26 26 H 1.09004 * 108.27069 * 206.72354 * 14 13 11 27 27 H 1.08994 * 109.92312 * 178.05356 * 15 14 13 28 28 H 1.09002 * 109.92564 * 56.85357 * 15 14 13 29 29 H 1.08998 * 110.08061 * 317.69454 * 16 15 14 30 30 H 1.09001 * 110.07482 * 196.09720 * 16 15 14 31 31 H 1.08996 * 109.32591 * 136.10623 * 17 16 15 32 32 H 1.08999 * 109.18068 * 16.53860 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.0889 -2.7822 -0.0022 11 6 0.3143 -4.1047 0.6486 12 1 -0.1970 -4.9886 0.2673 13 6 0.4005 -4.0583 2.1582 14 6 0.8335 -5.3790 2.7522 15 6 2.3181 -5.5862 2.8146 16 6 2.8421 -5.5813 1.3522 17 6 2.8715 -4.1132 0.9101 18 6 1.6921 -3.8132 -0.0143 19 1 1.8144 -4.2325 -1.0130 20 1 -0.4850 0.8401 0.0004 21 1 -0.7093 -2.1576 0.6404 22 1 -0.5070 -2.9025 -1.0017 23 1 -0.5780 -3.7947 2.5595 24 1 1.1182 -3.2899 2.4458 25 1 0.3984 -6.1827 2.1581 26 1 0.4338 -5.4460 3.7642 27 1 2.5400 -6.5437 3.2855 28 1 2.7826 -4.7772 3.3784 29 1 2.1694 -6.1517 0.7117 30 1 3.8460 -6.0040 1.3131 31 1 3.8037 -3.9143 0.3816 32 1 2.8119 -3.4729 1.7902 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685968134.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:12 Heat of formation + Delta-G solvation = 37.383245 kcal Electronic energy + Delta-G solvation = -13002.622982 eV Core-core repulsion = 10964.206124 eV Total energy + Delta-G solvation = -2038.416858 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.37107 -35.26698 -32.07051 -31.30774 -28.19977 -26.48053 -24.24616 -22.11854 -20.97787 -20.22303 -17.94977 -16.38303 -15.21652 -14.83197 -14.52839 -13.97731 -13.36135 -12.56445 -12.43133 -12.09132 -11.97253 -11.67599 -11.05883 -10.95771 -10.78172 -10.50518 -10.39497 -10.10179 -10.00521 -9.76137 -9.43918 -9.40347 -8.83577 -8.67328 -6.75731 -5.67591 -2.98321 3.43140 3.47812 3.49821 4.52432 5.09385 5.15326 5.33064 5.41086 5.57551 5.61449 5.81208 5.84718 6.00430 6.10595 6.11586 6.31802 6.44407 6.46593 6.51488 6.60087 6.68648 6.72784 6.81017 6.96883 7.04029 7.14814 7.36810 7.63286 7.69576 8.09910 9.14779 9.80913 10.77580 11.50040 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.051631 B = 0.011320 C = 0.010544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.179143 B = 2472.883652 C = 2654.805022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.211 4.211 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.161 3.839 11 C -0.135 4.135 12 H 0.063 0.937 13 C -0.091 4.091 14 C -0.113 4.113 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.123 4.123 18 C 0.143 3.857 19 H 0.040 0.960 20 H 0.252 0.748 21 H 0.068 0.932 22 H 0.020 0.980 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.044 0.956 32 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.189 -10.121 3.930 11.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.338 4.338 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.035 3.965 11 C -0.154 4.154 12 H 0.081 0.919 13 C -0.128 4.128 14 C -0.150 4.150 15 C -0.154 4.154 16 C -0.153 4.153 17 C -0.162 4.162 18 C 0.036 3.964 19 H 0.057 0.943 20 H 0.062 0.938 21 H 0.087 0.913 22 H 0.038 0.962 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.220 -9.728 3.940 10.728 hybrid contribution 0.453 0.988 -0.272 1.120 sum 2.674 -8.740 3.668 9.849 Atomic orbital electron populations 1.69840 1.04940 1.25038 1.57059 1.24757 0.95626 0.97316 1.02986 0.86172 0.78632 0.83812 0.77501 1.21781 1.21730 1.20707 1.18902 0.90078 0.81721 1.43117 0.90435 1.45565 1.02493 0.99073 1.85756 1.21802 0.88573 0.89683 0.96426 1.22997 0.98291 0.98774 0.95339 0.91880 1.20507 1.01174 0.96883 0.94278 1.20657 0.95900 0.98579 0.99889 1.21588 0.96414 1.00557 0.96793 1.22082 0.99758 0.97424 0.96037 1.22012 0.98506 0.95034 1.00603 1.22638 0.92436 0.86494 0.94880 0.94251 0.93842 0.91343 0.96231 0.92974 0.90740 0.92940 0.93515 0.92844 0.91947 0.91835 0.93057 0.93690 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.97 11.48 55.49 0.64 -27.34 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.61 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.21 -6.01 10.50 -15.06 -0.16 -6.17 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.60 -15.76 3.36 -170.06 -0.57 -16.34 16 10 C 0.16 3.93 6.87 -6.66 -0.05 3.89 16 11 C -0.13 -2.63 3.84 -90.17 -0.35 -2.97 16 12 H 0.06 1.10 8.05 -51.93 -0.42 0.68 16 13 C -0.09 -1.64 4.74 -28.53 -0.14 -1.78 16 14 C -0.11 -1.63 5.14 -29.14 -0.15 -1.78 16 15 C -0.12 -1.60 5.84 -26.96 -0.16 -1.76 16 16 C -0.11 -1.69 5.84 -25.31 -0.15 -1.84 16 17 C -0.12 -2.27 5.00 -26.64 -0.13 -2.41 16 18 C 0.14 3.01 4.16 -68.95 -0.29 2.72 16 19 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 20 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 22 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 24 H 0.07 1.55 6.07 -51.93 -0.31 1.24 16 25 H 0.05 0.72 7.73 -51.93 -0.40 0.32 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.90 7.53 -51.93 -0.39 0.51 16 29 H 0.06 0.92 7.34 -51.93 -0.38 0.53 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.48 5.56 -51.93 -0.29 1.20 16 LS Contribution 245.65 15.07 3.70 3.70 Total: -1.00 -30.21 245.65 -7.98 -38.19 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -5.07 Total: -3.33 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.66 Total: -12.50 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.07 Total: -43.67 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.21 -7.98 -38.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968134.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.570 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds