Wall clock time and date at job start Mon Mar 30 2020 02:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99682 * 2 1 4 4 H 1.48502 * 109.46939 * 274.81373 * 3 2 1 5 5 H 1.48498 * 109.47328 * 34.81544 * 3 2 1 6 6 H 1.48500 * 109.47441 * 154.81813 * 3 2 1 7 7 C 1.38816 * 120.00461 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99997 * 187.65771 * 7 2 1 9 9 N 1.36936 * 119.99746 * 7.66055 * 7 2 1 10 10 C 1.48327 * 135.01656 * 7.04280 * 9 7 2 11 11 C 1.52869 * 85.13528 * 151.91930 * 10 9 7 12 12 H 1.09000 * 113.20980 * 273.35104 * 11 10 9 13 13 C 1.51939 * 117.06415 * 139.93230 * 11 10 9 14 14 C 1.53760 * 108.67196 * 204.09304 * 13 11 10 15 15 C 1.52982 * 109.13135 * 60.17391 * 14 13 11 16 16 C 1.53289 * 110.46186 * 259.00613 * 15 14 13 17 17 C 1.52988 * 109.38936 * 82.92305 * 16 15 14 18 18 C 1.46422 * 135.01428 * 187.09143 * 9 7 2 19 19 H 1.09004 * 113.33870 * 94.55859 * 18 9 7 20 20 H 0.96991 * 120.00319 * 0.02562 * 1 2 3 21 21 H 1.09010 * 113.92343 * 37.86810 * 10 9 7 22 22 H 1.08996 * 114.05357 * 265.98893 * 10 9 7 23 23 H 1.09005 * 109.60418 * 323.84366 * 13 11 10 24 24 H 1.08998 * 109.60847 * 84.33283 * 13 11 10 25 25 H 1.08998 * 109.49644 * 179.77397 * 14 13 11 26 26 H 1.08997 * 109.49492 * 299.83443 * 14 13 11 27 27 H 1.09003 * 109.30774 * 138.82534 * 15 14 13 28 28 H 1.08998 * 109.48214 * 19.29435 * 15 14 13 29 29 H 1.08994 * 109.48283 * 322.94410 * 16 15 14 30 30 H 1.08996 * 109.48351 * 202.90279 * 16 15 14 31 31 H 1.09002 * 109.59268 * 119.58665 * 17 16 15 32 32 H 1.09000 * 109.59565 * 240.05181 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3958 2.1052 -1.3952 5 1 1.5022 2.6212 0.7993 6 1 3.5949 1.4131 0.5957 7 6 2.0104 -1.2021 0.0005 8 1 3.0831 -1.2061 0.1252 9 7 1.3349 -2.3828 -0.1570 10 6 -0.0650 -2.7563 -0.4747 11 6 0.5466 -4.0213 -1.0771 12 1 0.8503 -3.8986 -2.1167 13 6 -0.1905 -5.3279 -0.8361 14 6 0.8116 -6.4878 -0.9563 15 6 1.9122 -6.3102 0.0913 16 6 3.1757 -5.7278 -0.5522 17 6 3.0402 -4.2072 -0.6517 18 6 1.6949 -3.8001 -0.0808 19 1 1.5056 -4.2417 0.8975 20 1 -0.4850 0.8399 -0.0004 21 1 -0.5413 -2.1039 -1.2066 22 1 -0.6858 -2.9397 0.4022 23 1 -0.6262 -5.3231 0.1631 24 1 -0.9780 -5.4462 -1.5804 25 1 0.2970 -7.4327 -0.7817 26 1 1.2472 -6.4901 -1.9555 27 1 2.1485 -7.2782 0.5334 28 1 1.5643 -5.6352 0.8732 29 1 3.3020 -6.1477 -1.5501 30 1 4.0429 -5.9764 0.0594 31 1 3.8384 -3.7311 -0.0821 32 1 3.1015 -3.9023 -1.6964 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685968135.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:16 Heat of formation + Delta-G solvation = 48.750244 kcal Electronic energy + Delta-G solvation = -12924.647806 eV Core-core repulsion = 10886.723858 eV Total energy + Delta-G solvation = -2037.923948 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.56301 -35.04033 -32.22141 -31.67589 -27.95900 -26.18546 -24.46546 -22.51591 -21.16617 -19.71438 -18.47425 -16.32897 -15.33479 -14.50070 -14.20699 -13.99335 -13.61473 -13.00529 -12.38616 -12.19979 -12.01963 -11.59555 -11.22330 -11.05629 -10.77112 -10.46194 -10.31480 -10.11281 -10.00837 -9.81546 -9.51131 -9.33393 -8.95370 -8.61579 -6.74406 -5.69609 -2.98457 3.43307 3.48100 3.50241 4.52165 5.07611 5.10397 5.22091 5.45440 5.56224 5.63323 5.76456 5.79410 5.85476 6.03136 6.09599 6.22397 6.32334 6.45623 6.48838 6.50071 6.62192 6.66965 6.76425 6.80949 7.03020 7.06165 7.33968 7.57780 7.65777 8.07522 9.12569 9.80710 10.74714 11.49237 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.059828 B = 0.010775 C = 0.009475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.892695 B = 2598.023673 C = 2954.414561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.217 4.217 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.169 3.831 11 C -0.133 4.133 12 H 0.079 0.921 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.139 4.139 16 C -0.111 4.111 17 C -0.118 4.118 18 C 0.141 3.859 19 H 0.049 0.951 20 H 0.252 0.748 21 H 0.060 0.940 22 H 0.029 0.971 23 H 0.059 0.941 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.026 -11.275 -1.675 11.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.345 4.345 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.044 3.956 11 C -0.153 4.153 12 H 0.097 0.903 13 C -0.150 4.150 14 C -0.149 4.149 15 C -0.176 4.176 16 C -0.149 4.149 17 C -0.157 4.157 18 C 0.035 3.965 19 H 0.066 0.934 20 H 0.062 0.938 21 H 0.079 0.921 22 H 0.047 0.953 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.068 -10.896 -1.633 11.210 hybrid contribution 0.466 1.003 0.130 1.114 sum 2.534 -9.893 -1.503 10.322 Atomic orbital electron populations 1.69852 1.04988 1.25135 1.56896 1.24784 0.95591 0.97479 1.02810 0.86161 0.78663 0.83854 0.77472 1.21707 1.21823 1.20678 1.19003 0.90610 0.82326 1.42526 0.90445 1.46105 1.06037 0.99101 1.81856 1.22044 0.87702 0.89910 0.95973 1.23261 0.98251 0.94275 0.99483 0.90304 1.21519 0.97377 0.94949 1.01125 1.21703 0.96654 0.97574 0.98971 1.22031 0.95634 1.00314 0.99631 1.21633 0.97111 0.96189 0.99957 1.21415 0.98840 0.94188 1.01221 1.22052 0.92572 0.86251 0.95635 0.93439 0.93810 0.92118 0.95288 0.92259 0.92716 0.93070 0.92279 0.93438 0.89581 0.92640 0.92932 0.92709 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.19 11.76 55.49 0.65 -27.54 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.91 22.74 29.56 -169.99 -5.02 17.71 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.22 -6.25 10.61 -15.06 -0.16 -6.41 16 8 H 0.08 2.17 7.84 -52.49 -0.41 1.76 16 9 N -0.61 -16.00 3.59 -182.43 -0.65 -16.65 16 10 C 0.17 4.11 7.08 -3.61 -0.03 4.08 16 11 C -0.13 -2.60 3.34 -91.19 -0.30 -2.90 16 12 H 0.08 1.58 7.94 -51.93 -0.41 1.16 16 13 C -0.11 -1.74 5.57 -26.88 -0.15 -1.89 16 14 C -0.11 -1.51 5.83 -26.34 -0.15 -1.66 16 15 C -0.14 -1.95 5.45 -26.59 -0.14 -2.09 16 16 C -0.11 -1.61 6.10 -26.59 -0.16 -1.77 16 17 C -0.12 -2.16 6.01 -27.39 -0.16 -2.32 16 18 C 0.14 2.95 3.06 -68.81 -0.21 2.74 16 19 H 0.05 1.01 5.59 -51.93 -0.29 0.72 16 20 H 0.25 7.45 8.31 -40.82 -0.34 7.12 16 21 H 0.06 1.61 7.60 -51.92 -0.39 1.22 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.79 7.43 -51.93 -0.39 0.40 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.35 4.56 -51.93 -0.24 1.12 16 29 H 0.05 0.74 7.58 -51.93 -0.39 0.35 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.16 7.91 -51.93 -0.41 0.75 16 LS Contribution 246.48 15.07 3.71 3.71 Total: -1.00 -30.68 246.48 -7.91 -38.59 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -5.03 Total: -3.21 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -1.57 Total: -12.62 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.00 Total: -44.19 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.68 -7.91 -38.59 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968135.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.344 kcal (2) G-P(sol) polarization free energy of solvation -30.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds