Wall clock time and date at job start Mon Mar 30 2020 02:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99682 * 2 1 4 4 H 1.48502 * 109.46939 * 274.81373 * 3 2 1 5 5 H 1.48498 * 109.47328 * 34.81544 * 3 2 1 6 6 H 1.48500 * 109.47441 * 154.81813 * 3 2 1 7 7 C 1.38816 * 120.00461 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99997 * 187.65771 * 7 2 1 9 9 N 1.36936 * 119.99746 * 7.66055 * 7 2 1 10 10 C 1.48327 * 135.01656 * 7.04280 * 9 7 2 11 11 C 1.52869 * 85.13528 * 151.91930 * 10 9 7 12 12 H 1.09000 * 113.20980 * 273.35104 * 11 10 9 13 13 C 1.51939 * 117.06415 * 139.93230 * 11 10 9 14 14 C 1.53760 * 108.67196 * 204.09304 * 13 11 10 15 15 C 1.52982 * 109.13135 * 60.17391 * 14 13 11 16 16 C 1.53289 * 110.46186 * 259.00613 * 15 14 13 17 17 C 1.52988 * 109.38936 * 82.92305 * 16 15 14 18 18 C 1.46422 * 135.01428 * 187.09143 * 9 7 2 19 19 H 1.09004 * 113.33870 * 94.55859 * 18 9 7 20 20 H 0.96991 * 120.00319 * 0.02562 * 1 2 3 21 21 H 1.09010 * 113.92343 * 37.86810 * 10 9 7 22 22 H 1.08996 * 114.05357 * 265.98893 * 10 9 7 23 23 H 1.09005 * 109.60418 * 323.84366 * 13 11 10 24 24 H 1.08998 * 109.60847 * 84.33283 * 13 11 10 25 25 H 1.08998 * 109.49644 * 179.77397 * 14 13 11 26 26 H 1.08997 * 109.49492 * 299.83443 * 14 13 11 27 27 H 1.09003 * 109.30774 * 138.82534 * 15 14 13 28 28 H 1.08998 * 109.48214 * 19.29435 * 15 14 13 29 29 H 1.08994 * 109.48283 * 322.94410 * 16 15 14 30 30 H 1.08996 * 109.48351 * 202.90279 * 16 15 14 31 31 H 1.09002 * 109.59268 * 119.58665 * 17 16 15 32 32 H 1.09000 * 109.59565 * 240.05181 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3958 2.1052 -1.3952 5 1 1.5022 2.6212 0.7993 6 1 3.5949 1.4131 0.5957 7 6 2.0104 -1.2021 0.0005 8 1 3.0831 -1.2061 0.1252 9 7 1.3349 -2.3828 -0.1570 10 6 -0.0650 -2.7563 -0.4747 11 6 0.5466 -4.0213 -1.0771 12 1 0.8503 -3.8986 -2.1167 13 6 -0.1905 -5.3279 -0.8361 14 6 0.8116 -6.4878 -0.9563 15 6 1.9122 -6.3102 0.0913 16 6 3.1757 -5.7278 -0.5522 17 6 3.0402 -4.2072 -0.6517 18 6 1.6949 -3.8001 -0.0808 19 1 1.5056 -4.2417 0.8975 20 1 -0.4850 0.8399 -0.0004 21 1 -0.5413 -2.1039 -1.2066 22 1 -0.6858 -2.9397 0.4022 23 1 -0.6262 -5.3231 0.1631 24 1 -0.9780 -5.4462 -1.5804 25 1 0.2970 -7.4327 -0.7817 26 1 1.2472 -6.4901 -1.9555 27 1 2.1485 -7.2782 0.5334 28 1 1.5643 -5.6352 0.8732 29 1 3.3020 -6.1477 -1.5501 30 1 4.0429 -5.9764 0.0594 31 1 3.8384 -3.7311 -0.0821 32 1 3.1015 -3.9023 -1.6964 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685968135.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:16 Heat of formation + Delta-G solvation = 30.344953 kcal Electronic energy + Delta-G solvation = -12925.445919 eV Core-core repulsion = 10886.723858 eV Total energy + Delta-G solvation = -2038.722061 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.17175 -36.56656 -34.11061 -33.22860 -29.79751 -27.83743 -26.11292 -24.13234 -22.77704 -21.17726 -20.12900 -18.24248 -17.16437 -15.94534 -15.92849 -15.46352 -15.27616 -14.61933 -13.92416 -13.58866 -13.50439 -13.24406 -13.17000 -12.87213 -12.55075 -12.16449 -11.90551 -11.60431 -11.43452 -11.30334 -11.12015 -10.87179 -10.80608 -10.51471 -8.84625 -7.91108 -5.20999 1.42138 1.44628 1.53363 2.47380 3.29951 3.37475 3.78719 3.92967 4.22309 4.28514 4.40215 4.47663 4.49846 4.60680 4.65979 4.86152 4.98614 5.00761 5.17332 5.24337 5.29014 5.32527 5.37406 5.39183 5.45803 5.54437 5.57797 5.72322 5.87022 5.97793 6.92224 7.63332 8.64483 9.28160 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.059828 B = 0.010775 C = 0.009475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.892695 B = 2598.023673 C = 2954.414561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.073 4.073 3 Si 0.976 3.024 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.267 1.267 7 C -0.227 4.227 8 H 0.080 0.920 9 N -0.638 5.638 10 C 0.162 3.838 11 C -0.105 4.105 12 H 0.074 0.926 13 C -0.107 4.107 14 C -0.106 4.106 15 C -0.139 4.139 16 C -0.103 4.103 17 C -0.113 4.113 18 C 0.138 3.862 19 H 0.054 0.946 20 H 0.247 0.753 21 H 0.027 0.973 22 H 0.018 0.982 23 H 0.057 0.943 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.090 -13.264 -1.965 13.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.265 4.265 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.192 1.192 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.364 5.364 10 C 0.037 3.963 11 C -0.125 4.125 12 H 0.093 0.907 13 C -0.145 4.145 14 C -0.143 4.143 15 C -0.176 4.176 16 C -0.141 4.141 17 C -0.152 4.152 18 C 0.034 3.966 19 H 0.070 0.930 20 H 0.056 0.944 21 H 0.045 0.955 22 H 0.036 0.964 23 H 0.076 0.924 24 H 0.089 0.911 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.154 -12.928 -1.924 13.445 hybrid contribution 0.130 1.583 0.242 1.607 sum 3.284 -11.345 -1.682 11.930 Atomic orbital electron populations 1.70037 1.06530 1.25488 1.58585 1.25650 0.96516 1.00961 1.03399 0.85083 0.77832 0.79288 0.77314 1.21432 1.22095 1.19183 1.19383 0.91074 0.83814 1.41293 0.90273 1.46573 1.07080 1.00704 1.82020 1.22014 0.87113 0.92062 0.95144 1.22938 0.96948 0.94171 0.98431 0.90723 1.21501 0.98078 0.93372 1.01569 1.21691 0.95963 0.97456 0.99226 1.22010 0.95350 1.01112 0.99143 1.21607 0.98204 0.92748 1.01551 1.21373 0.96538 0.97340 0.99955 1.22295 0.94781 0.83132 0.96425 0.92951 0.94395 0.95495 0.96440 0.92449 0.91101 0.90329 0.91537 0.90761 0.91714 0.90800 0.91377 0.93986 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.56 11.76 21.65 0.25 -60.31 16 2 C -0.07 -4.34 5.49 84.86 0.47 -3.88 16 3 Si 0.98 47.62 29.56 68.60 2.03 49.65 16 4 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.23 -13.36 10.61 84.03 0.89 -12.47 16 8 H 0.08 4.49 7.84 -2.91 -0.02 4.46 16 9 N -0.64 -34.46 3.59 -731.09 -2.62 -37.08 16 10 C 0.16 8.15 7.08 85.65 0.61 8.75 16 11 C -0.11 -4.06 3.34 -10.88 -0.04 -4.10 16 12 H 0.07 2.94 7.94 -2.39 -0.02 2.92 16 13 C -0.11 -3.08 5.57 30.50 0.17 -2.91 16 14 C -0.11 -2.43 5.83 30.84 0.18 -2.25 16 15 C -0.14 -3.37 5.45 30.69 0.17 -3.20 16 16 C -0.10 -2.64 6.10 30.69 0.19 -2.45 16 17 C -0.11 -4.00 6.01 30.17 0.18 -3.82 16 18 C 0.14 5.75 3.06 44.46 0.14 5.88 16 19 H 0.05 2.19 5.59 -2.39 -0.01 2.18 16 20 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 21 H 0.03 1.50 7.60 -2.38 -0.02 1.48 16 22 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 1.69 8.11 -2.38 -0.02 1.67 16 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.47 7.43 -2.39 -0.02 1.45 16 27 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.87 4.56 -2.39 -0.01 1.86 16 29 H 0.07 1.66 7.58 -2.39 -0.02 1.64 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.88 7.91 -2.39 -0.02 1.86 16 Total: -1.00 -67.59 246.48 3.68 -63.90 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 1.08 Total: 4.29 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: 2.95 Total: -20.45 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -2.37 Total: -97.39 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -67.59 3.68 -63.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968135.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.247 kcal (2) G-P(sol) polarization free energy of solvation -67.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds