Wall clock time and date at job start Mon Mar 30 2020 02:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00167 * 2 1 4 4 H 1.48501 * 109.47126 * 274.99162 * 3 2 1 5 5 H 1.48507 * 109.47230 * 34.98795 * 3 2 1 6 6 H 1.48501 * 109.47427 * 154.98793 * 3 2 1 7 7 C 1.38814 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99952 * 185.03291 * 7 2 1 9 9 N 1.36939 * 119.99639 * 5.03174 * 7 2 1 10 10 C 1.47713 * 136.59969 * 353.63557 * 9 7 2 11 11 C 1.52679 * 87.13288 * 210.33810 * 10 9 7 12 12 H 1.09003 * 114.22843 * 84.43159 * 11 10 9 13 13 C 1.52039 * 116.29518 * 219.96442 * 11 10 9 14 14 C 1.52924 * 108.93911 * 172.04705 * 13 11 10 15 15 C 1.53268 * 109.44243 * 0.16164 * 14 13 11 16 16 C 1.52903 * 110.70968 * 277.23341 * 15 14 13 17 17 C 1.53698 * 109.30891 * 100.60885 * 16 15 14 18 18 C 1.46106 * 136.59287 * 173.67538 * 9 7 2 19 19 H 1.08998 * 112.98435 * 263.24089 * 18 9 7 20 20 H 0.97006 * 119.99546 * 359.97438 * 1 2 3 21 21 H 1.09008 * 113.60693 * 324.90399 * 10 9 7 22 22 H 1.09000 * 113.60663 * 95.77402 * 10 9 7 23 23 H 1.08994 * 109.56739 * 291.88491 * 13 11 10 24 24 H 1.09001 * 109.55695 * 52.10052 * 13 11 10 25 25 H 1.08996 * 109.47949 * 120.15132 * 14 13 11 26 26 H 1.09003 * 109.47548 * 240.16822 * 14 13 11 27 27 H 1.08997 * 109.22621 * 37.55025 * 15 14 13 28 28 H 1.09002 * 109.22825 * 156.95760 * 15 14 13 29 29 H 1.09001 * 109.49845 * 340.66017 * 16 15 14 30 30 H 1.09001 * 109.49507 * 220.55952 * 16 15 14 31 31 H 1.08999 * 109.59210 * 180.35717 * 17 16 15 32 32 H 1.09002 * 109.58960 * 59.92186 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5044 2.6200 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0872 -1.2040 0.0815 9 7 1.3295 -2.3857 -0.1051 10 6 -0.0844 -2.8129 -0.1190 11 6 0.3842 -4.1205 0.5148 12 1 0.4856 -4.0808 1.5994 13 6 -0.2820 -5.3905 0.0099 14 6 0.4421 -6.6001 0.6024 15 6 1.5854 -6.1196 1.5029 16 6 2.8279 -5.7954 0.6728 17 6 2.9224 -4.2745 0.4722 18 6 1.6727 -3.7982 -0.2528 19 1 1.6383 -4.1386 -1.2877 20 1 -0.4850 0.8401 0.0004 21 1 -0.7265 -2.2183 0.5310 22 1 -0.4935 -2.9359 -1.1218 23 1 -1.3268 -5.4027 0.3200 24 1 -0.2239 -5.4252 -1.0780 25 1 -0.2596 -7.1916 1.1905 26 1 0.8469 -7.2121 -0.2037 27 1 1.2684 -5.2251 2.0390 28 1 1.8289 -6.9017 2.2221 29 1 2.7554 -6.2865 -0.2976 30 1 3.7168 -6.1495 1.1949 31 1 3.8035 -4.0386 -0.1247 32 1 2.9927 -3.7816 1.4419 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685968136.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:19 Heat of formation + Delta-G solvation = 51.225704 kcal Electronic energy + Delta-G solvation = -12918.588717 eV Core-core repulsion = 10880.772113 eV Total energy + Delta-G solvation = -2037.816604 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.63021 -35.11535 -32.11135 -31.77504 -27.98363 -26.30559 -24.19802 -22.63887 -21.06374 -19.91305 -18.19107 -16.54550 -15.27500 -14.46668 -14.17309 -13.98737 -13.62983 -13.01576 -12.63837 -12.33989 -11.80407 -11.52304 -11.13519 -11.05545 -10.78350 -10.53265 -10.35997 -10.09085 -9.96688 -9.64620 -9.55263 -9.47984 -8.76329 -8.71043 -6.76225 -5.70518 -3.00615 3.42658 3.47496 3.49654 4.50742 5.07339 5.10520 5.27739 5.44961 5.57158 5.62722 5.76852 5.82922 5.89142 5.99978 6.12369 6.22145 6.32528 6.40142 6.49327 6.60017 6.63217 6.68732 6.71106 6.82024 7.02180 7.04217 7.35971 7.57503 7.66249 8.05792 9.10512 9.78662 10.77250 11.47997 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.061264 B = 0.010612 C = 0.009437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.932407 B = 2637.779395 C = 2966.401100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.211 4.211 8 H 0.080 0.920 9 N -0.606 5.606 10 C 0.155 3.845 11 C -0.141 4.141 12 H 0.095 0.905 13 C -0.109 4.109 14 C -0.113 4.113 15 C -0.134 4.134 16 C -0.109 4.109 17 C -0.120 4.120 18 C 0.147 3.853 19 H 0.034 0.966 20 H 0.252 0.748 21 H 0.068 0.932 22 H 0.023 0.977 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.521 -11.253 1.495 11.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.338 4.338 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.029 3.971 11 C -0.160 4.160 12 H 0.113 0.887 13 C -0.147 4.147 14 C -0.151 4.151 15 C -0.171 4.171 16 C -0.147 4.147 17 C -0.159 4.159 18 C 0.040 3.960 19 H 0.051 0.949 20 H 0.062 0.938 21 H 0.086 0.914 22 H 0.041 0.959 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.576 -10.852 1.518 11.070 hybrid contribution 0.485 0.969 -0.263 1.115 sum 2.061 -9.883 1.255 10.173 Atomic orbital electron populations 1.69858 1.05017 1.25131 1.56616 1.24808 0.95657 0.97394 1.02800 0.86154 0.78738 0.83815 0.77458 1.21743 1.21767 1.20597 1.18904 0.90511 0.81637 1.42782 0.90258 1.45606 1.02686 1.00253 1.84442 1.22017 0.88577 0.89706 0.96750 1.23359 0.98369 0.94266 1.00043 0.88675 1.21295 0.98853 0.94588 1.00005 1.21646 0.97296 0.97462 0.98653 1.21955 0.95249 1.01663 0.98253 1.21630 0.97069 0.96550 0.99491 1.21721 0.98721 0.94343 1.01116 1.21852 0.92342 0.86362 0.95424 0.94856 0.93793 0.91376 0.95881 0.92580 0.92391 0.92895 0.92677 0.89734 0.93549 0.92481 0.92996 0.93178 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.05 11.63 55.49 0.65 -27.40 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.64 29.56 -169.99 -5.02 17.62 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.21 -6.07 10.66 -15.06 -0.16 -6.23 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.61 -16.01 3.69 -190.55 -0.70 -16.71 16 10 C 0.15 3.77 7.03 -12.30 -0.09 3.69 16 11 C -0.14 -2.74 2.83 -91.08 -0.26 -2.99 16 12 H 0.10 1.88 5.87 -51.93 -0.30 1.57 16 13 C -0.11 -1.70 5.81 -27.26 -0.16 -1.86 16 14 C -0.11 -1.51 6.10 -26.63 -0.16 -1.67 16 15 C -0.13 -1.88 5.44 -26.64 -0.14 -2.03 16 16 C -0.11 -1.60 5.84 -26.42 -0.15 -1.75 16 17 C -0.12 -2.21 5.70 -26.81 -0.15 -2.37 16 18 C 0.15 3.12 3.50 -77.14 -0.27 2.85 16 19 H 0.03 0.73 7.89 -51.93 -0.41 0.32 16 20 H 0.25 7.43 8.31 -40.82 -0.34 7.10 16 21 H 0.07 1.83 7.23 -51.92 -0.38 1.45 16 22 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.91 7.88 -51.93 -0.41 0.50 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.69 7.59 -51.93 -0.39 0.30 16 27 H 0.08 1.33 4.66 -51.93 -0.24 1.09 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.80 7.42 -51.93 -0.39 0.42 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 LS Contribution 246.25 15.07 3.71 3.71 Total: -1.00 -30.54 246.25 -8.04 -38.57 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -5.02 Total: -3.03 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -1.64 Total: -12.76 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -0.06 Total: -44.11 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -30.54 -8.04 -38.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685968136.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.800 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds