Wall clock time and date at job start Mon Mar 30 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86798 * 119.99657 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00159 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99910 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99621 * 3 2 1 7 7 C 1.40314 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00227 * 0.02562 * 7 2 1 9 9 C 1.40065 * 119.99792 * 180.02562 * 7 2 1 10 10 C 1.35037 * 120.00308 * 180.02562 * 9 7 2 11 11 C 1.50696 * 120.00088 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46721 * 124.99833 * 11 10 9 13 13 H 1.08998 * 109.50368 * 305.07187 * 12 11 10 14 14 C 1.53123 * 109.50099 * 184.99825 * 12 11 10 15 15 C 1.53122 * 109.16285 * 182.40360 * 14 12 11 16 16 C 1.53045 * 109.27477 * 57.65142 * 15 14 12 17 17 N 1.46843 * 109.52460 * 300.82353 * 16 15 14 18 18 C 1.46840 * 111.19853 * 61.74085 * 17 16 15 19 19 H 0.96996 * 120.00343 * 0.02562 * 1 2 3 20 20 H 1.08004 * 120.00444 * 359.97438 * 9 7 2 21 21 H 1.08004 * 119.99247 * 359.97438 * 10 9 7 22 22 H 1.08999 * 109.47056 * 244.99680 * 11 10 9 23 23 H 1.09000 * 109.47147 * 4.99924 * 11 10 9 24 24 H 1.08999 * 109.52352 * 302.30603 * 14 12 11 25 25 H 1.08998 * 109.52453 * 62.50226 * 14 12 11 26 26 H 1.08991 * 109.50693 * 177.59560 * 15 14 12 27 27 H 1.09000 * 109.50114 * 297.68032 * 15 14 12 28 28 H 1.08993 * 109.45926 * 60.84120 * 16 15 14 29 29 H 1.09001 * 109.45805 * 180.81324 * 16 15 14 30 30 H 1.00895 * 110.99602 * 185.84024 * 17 16 15 31 31 H 1.09002 * 109.46031 * 178.23901 * 18 17 16 32 32 H 1.09005 * 109.46415 * 58.27461 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.4884 2.0465 1.4000 5 1 3.5384 1.4401 -0.7001 6 1 1.4383 2.6526 -0.7001 7 6 2.0085 -1.2152 0.0005 8 1 1.4685 -2.1505 0.0005 9 6 3.4091 -1.2151 0.0011 10 6 4.0844 -2.3845 0.0011 11 6 5.5914 -2.3845 0.0011 12 6 6.1013 -3.2118 1.1828 13 1 5.6660 -2.8326 2.1073 14 6 7.6274 -3.1103 1.2571 15 6 8.1342 -3.9883 2.4046 16 6 7.6750 -5.4306 2.1780 17 7 6.2086 -5.4745 2.1150 18 6 5.7012 -4.6765 0.9917 19 1 -0.4850 0.8400 -0.0004 20 1 3.9492 -0.2798 0.0007 21 1 3.5443 -3.3199 0.0011 22 1 5.9547 -2.8188 -0.9303 23 1 5.9547 -1.3607 0.0906 24 1 8.0614 -3.4524 0.3176 25 1 7.9152 -2.0744 1.4367 26 1 9.2231 -3.9538 2.4357 27 1 7.7313 -3.6217 3.3487 28 1 8.0900 -5.8007 1.2406 29 1 8.0220 -6.0557 3.0008 30 1 5.8774 -6.4260 2.0613 31 1 4.6146 -4.7540 0.9526 32 1 6.1255 -5.0502 0.0597 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687678575.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:17 Heat of formation + Delta-G solvation = -39.151042 kcal Electronic energy + Delta-G solvation = -12053.297415 eV Core-core repulsion = 10011.561782 eV Total energy + Delta-G solvation = -2041.735634 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.68691 -36.38150 -34.87263 -32.99769 -32.08930 -28.58536 -25.27081 -24.63165 -22.52400 -20.48875 -20.05974 -19.49040 -17.37956 -16.65145 -15.75039 -15.32708 -15.19128 -14.69884 -14.60807 -14.00732 -13.74476 -13.57715 -13.32627 -13.09878 -12.31771 -12.05578 -12.00835 -11.89899 -11.60097 -11.50761 -11.35215 -11.10201 -10.82406 -9.80833 -9.35600 -8.79206 -6.33939 1.20996 1.30058 1.45324 1.81972 2.14733 3.27704 3.36921 3.92248 4.04473 4.08364 4.28711 4.49294 4.58591 4.64793 4.71452 4.84334 4.86772 4.98059 5.01698 5.11486 5.13367 5.20691 5.35402 5.37724 5.60789 5.66011 5.88181 6.13686 6.31763 6.44274 6.54863 6.90598 7.12498 8.32048 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.062457 B = 0.007182 C = 0.006719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.202035 B = 3897.947463 C = 4166.246661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.026 3.974 3 Si 0.975 3.025 4 H -0.254 1.254 5 H -0.246 1.246 6 H -0.263 1.263 7 C -0.489 4.489 8 H 0.031 0.969 9 C -0.011 4.011 10 C -0.381 4.381 11 C -0.036 4.036 12 C -0.076 4.076 13 H 0.050 0.950 14 C -0.115 4.115 15 C -0.116 4.116 16 C 0.056 3.944 17 N -0.703 5.703 18 C 0.073 3.927 19 H 0.291 0.709 20 H 0.083 0.917 21 H 0.059 0.941 22 H 0.045 0.955 23 H 0.049 0.951 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.032 0.968 29 H 0.088 0.912 30 H 0.348 0.652 31 H 0.054 0.946 32 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.371 -4.141 2.806 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.185 4.185 3 Si 0.794 3.206 4 H -0.178 1.178 5 H -0.169 1.169 6 H -0.187 1.187 7 C -0.519 4.519 8 H 0.049 0.951 9 C -0.031 4.031 10 C -0.403 4.403 11 C -0.073 4.073 12 C -0.095 4.095 13 H 0.068 0.932 14 C -0.152 4.152 15 C -0.153 4.153 16 C -0.072 4.072 17 N -0.335 5.335 18 C -0.056 4.056 19 H 0.102 0.898 20 H 0.101 0.899 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.106 0.894 30 H 0.166 0.834 31 H 0.072 0.928 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 15.015 -3.538 3.263 15.767 hybrid contribution -0.471 -0.247 -0.822 0.979 sum 14.544 -3.784 2.441 15.225 Atomic orbital electron populations 1.69650 1.09490 1.31257 1.39578 1.27239 0.95788 1.05057 0.90396 0.85306 0.79493 0.75393 0.80433 1.17832 1.16927 1.18731 1.19537 0.92582 0.93426 1.46401 0.95085 1.20146 0.93107 0.96074 0.93742 1.22275 0.94432 0.95034 1.28527 1.20056 0.92633 0.98301 0.96335 1.21120 0.95651 0.94481 0.98241 0.93171 1.21659 0.94188 1.00353 0.99044 1.21601 1.00858 0.94516 0.98366 1.22003 0.86974 0.97648 1.00624 1.60239 1.10537 1.16886 1.45798 1.21794 0.98975 0.93763 0.91077 0.89844 0.89893 0.92252 0.93692 0.93276 0.91877 0.91597 0.89534 0.92309 0.94951 0.89366 0.83382 0.92796 0.95400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -50.28 13.92 21.90 0.30 -49.98 16 2 C 0.03 1.47 5.52 85.37 0.47 1.94 16 3 Si 0.97 41.38 27.47 68.60 1.88 43.26 16 4 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.25 -9.98 6.36 99.48 0.63 -9.35 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.49 -29.32 9.64 23.22 0.22 -29.09 16 8 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 9 C -0.01 -0.58 8.50 21.98 0.19 -0.39 16 10 C -0.38 -18.74 8.79 24.95 0.22 -18.52 16 11 C -0.04 -1.38 5.15 29.85 0.15 -1.23 16 12 C -0.08 -2.59 2.34 -10.74 -0.03 -2.61 16 13 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 14 C -0.11 -3.03 5.29 30.68 0.16 -2.87 16 15 C -0.12 -2.58 6.09 30.65 0.19 -2.40 16 16 C 0.06 1.23 6.55 86.33 0.57 1.80 16 17 N -0.70 -19.13 6.84 -514.03 -3.52 -22.65 16 18 C 0.07 2.38 5.63 86.33 0.49 2.86 16 19 H 0.29 14.96 8.29 -92.71 -0.77 14.19 16 20 H 0.08 4.06 5.12 -2.91 -0.01 4.04 16 21 H 0.06 3.13 6.98 -2.91 -0.02 3.11 16 22 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.05 1.84 7.84 -2.39 -0.02 1.82 16 24 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.35 8.05 8.90 -89.70 -0.80 7.25 16 31 H 0.05 2.02 6.77 -2.39 -0.02 2.01 16 32 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -62.80 257.56 1.51 -61.29 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.21 Total: 18.59 kcal Atomic # 6 Polarization: -53.14 SS G_CDS: 2.63 Total: -50.51 kcal Atomic # 7 Polarization: -69.41 SS G_CDS: -3.21 Total: -72.62 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 1.88 Total: 43.26 kcal Total: -62.80 1.51 -61.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687678575.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.136 kcal (2) G-P(sol) polarization free energy of solvation -62.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds