Wall clock time and date at job start Mon Mar 30 2020 02:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99971 * 2 1 4 4 H 1.48496 * 109.46742 * 269.99684 * 3 2 1 5 5 H 1.48498 * 109.47047 * 29.99714 * 3 2 1 6 6 H 1.48501 * 109.47091 * 149.99621 * 3 2 1 7 7 C 1.37875 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99687 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00286 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.47216 * 185.20723 * 9 7 2 11 11 C 1.49558 * 111.00007 * 174.83849 * 10 9 7 12 12 C 1.50436 * 85.03226 * 210.88508 * 11 10 9 13 13 H 1.08999 * 113.72740 * 283.82853 * 12 11 10 14 14 C 1.51824 * 124.09678 * 139.47014 * 12 11 10 15 15 C 1.53950 * 106.23769 * 206.52074 * 14 12 11 16 16 C 1.52372 * 112.55871 * 56.80694 * 15 14 12 17 17 C 1.54256 * 112.13264 * 306.47927 * 16 15 14 18 18 C 1.43583 * 110.99915 * 83.20402 * 10 9 7 19 19 H 1.09001 * 112.04768 * 36.41964 * 18 10 9 20 20 H 0.97001 * 120.00029 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47692 * 65.20842 * 9 7 2 22 22 H 1.09004 * 109.47218 * 305.20554 * 9 7 2 23 23 H 1.08996 * 113.94636 * 324.91189 * 11 10 9 24 24 H 1.09011 * 113.93966 * 96.72162 * 11 10 9 25 25 H 1.08998 * 110.09549 * 325.70260 * 14 12 11 26 26 H 1.09000 * 110.08957 * 87.23161 * 14 12 11 27 27 H 1.09006 * 108.86802 * 177.60204 * 15 14 12 28 28 H 1.09004 * 108.86848 * 296.01287 * 15 14 12 29 29 H 1.09005 * 108.94354 * 67.16167 * 16 15 14 30 30 H 1.09001 * 108.95139 * 185.79590 * 16 15 14 31 31 H 1.08999 * 110.18473 * 175.79877 * 17 16 15 32 32 H 1.08995 * 110.18974 * 297.55331 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5733 -0.1241 11 6 5.4910 -2.6036 -0.2524 12 6 5.2638 -3.8381 -1.0814 13 1 5.0198 -4.7227 -0.4932 14 6 6.0296 -4.1633 -2.3514 15 6 5.1008 -5.0522 -3.1984 16 6 3.7603 -4.3881 -3.4880 17 6 3.0587 -3.9095 -2.2003 18 6 4.0238 -2.9886 -1.4984 19 1 4.3063 -2.1754 -2.1670 20 1 -0.4850 0.8400 -0.0004 21 1 3.8746 -0.7629 0.9341 22 1 3.8752 -0.6017 -0.8386 23 1 5.9040 -1.7645 -0.8123 24 1 6.0122 -2.7886 0.6870 25 1 6.2655 -3.2465 -2.8917 26 1 6.9462 -4.7009 -2.1087 27 1 5.5942 -5.2772 -4.1441 28 1 4.9235 -5.9860 -2.6648 29 1 3.9238 -3.5312 -4.1415 30 1 3.1143 -5.1024 -3.9984 31 1 2.1416 -3.3751 -2.4480 32 1 2.8356 -4.7593 -1.5553 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687714557.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:14 Heat of formation + Delta-G solvation = 41.756560 kcal Electronic energy + Delta-G solvation = -12736.491911 eV Core-core repulsion = 10698.264694 eV Total energy + Delta-G solvation = -2038.227217 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.76273 -35.39868 -32.73808 -30.80422 -29.41605 -26.39190 -24.57719 -22.23718 -20.35788 -19.84025 -19.63302 -16.74358 -15.15429 -14.88923 -14.52356 -14.04914 -13.59035 -13.32453 -12.85796 -12.42323 -12.03440 -11.78382 -11.54582 -11.40214 -11.06728 -10.74534 -10.59081 -10.51343 -10.23208 -9.80187 -9.65534 -9.25738 -8.82068 -8.57542 -8.07724 -6.04147 -4.01282 3.27419 3.35307 3.37949 4.41467 4.43379 4.84720 4.98408 5.21963 5.27634 5.38479 5.53727 5.71967 5.75843 5.81854 5.88603 5.94311 6.09381 6.12471 6.25386 6.28374 6.38138 6.49464 6.56515 6.65499 6.70607 6.79058 6.92503 7.33895 7.76559 7.93462 8.63838 9.05766 9.57699 11.09203 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.050753 B = 0.010500 C = 0.009564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.561234 B = 2666.045266 C = 2927.087158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.875 3.125 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.505 4.505 8 H 0.080 0.920 9 C 0.122 3.878 10 N -0.435 5.435 11 C -0.002 4.002 12 C -0.135 4.135 13 H 0.100 0.900 14 C -0.102 4.102 15 C -0.113 4.113 16 C -0.113 4.113 17 C -0.098 4.098 18 C 0.038 3.962 19 H 0.053 0.947 20 H 0.263 0.737 21 H 0.028 0.972 22 H -0.007 1.007 23 H 0.061 0.939 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.186 -6.864 -5.767 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.544 4.544 8 H 0.098 0.902 9 C -0.005 4.005 10 N -0.156 5.156 11 C -0.130 4.130 12 C -0.154 4.154 13 H 0.118 0.882 14 C -0.140 4.140 15 C -0.151 4.151 16 C -0.151 4.151 17 C -0.136 4.136 18 C -0.072 4.072 19 H 0.071 0.929 20 H 0.073 0.927 21 H 0.046 0.954 22 H 0.010 0.990 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.611 -7.085 -5.220 13.786 hybrid contribution 0.615 1.686 -0.590 1.889 sum 11.227 -5.399 -5.810 13.746 Atomic orbital electron populations 1.69897 1.06095 1.26767 1.51197 1.24923 0.94750 0.98814 0.94898 0.86860 0.80382 0.84099 0.78429 1.20369 1.21087 1.19258 1.20945 0.88540 0.94753 1.50132 0.90237 1.20748 0.97946 0.86189 0.95652 1.69275 1.04655 1.23141 1.18572 1.23564 0.93378 0.96676 0.99415 1.22795 0.98836 0.97440 0.96289 0.88190 1.21365 0.97485 0.99618 0.95508 1.21452 0.95631 0.98845 0.99155 1.21516 0.95842 1.00011 0.97743 1.21141 0.98452 0.98650 0.95311 1.22683 0.95800 0.96659 0.92090 0.92878 0.92701 0.95417 0.98958 0.92100 0.90654 0.92161 0.92261 0.92663 0.92358 0.92555 0.92170 0.91195 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 3 Si 0.87 21.98 27.37 -169.99 -4.65 17.32 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.50 6.69 56.52 0.38 -6.12 16 7 C -0.51 -14.88 9.75 -34.44 -0.34 -15.21 16 8 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 9 C 0.12 3.08 3.70 -4.98 -0.02 3.06 16 10 N -0.43 -9.57 6.34 -303.39 -1.92 -11.50 16 11 C 0.00 -0.03 7.39 -22.79 -0.17 -0.20 16 12 C -0.13 -2.12 3.67 -91.39 -0.34 -2.45 16 13 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 14 C -0.10 -1.30 6.09 -26.83 -0.16 -1.46 16 15 C -0.11 -1.37 5.78 -26.56 -0.15 -1.52 16 16 C -0.11 -1.56 5.84 -26.40 -0.15 -1.71 16 17 C -0.10 -1.73 6.11 -27.21 -0.17 -1.89 16 18 C 0.04 0.73 2.42 -88.19 -0.21 0.51 16 19 H 0.05 1.06 7.17 -51.93 -0.37 0.69 16 20 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 21 H 0.03 0.71 7.56 -51.93 -0.39 0.32 16 22 H -0.01 -0.18 6.60 -51.93 -0.34 -0.53 16 23 H 0.06 1.03 7.79 -51.93 -0.40 0.62 16 24 H 0.08 1.21 8.14 -51.92 -0.42 0.78 16 25 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 LS Contribution 251.61 15.07 3.79 3.79 Total: -1.00 -30.89 251.61 -9.13 -40.02 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.32 Total: -3.34 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -1.81 Total: -18.97 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -1.15 Total: -38.84 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.65 Total: 17.32 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.89 -9.13 -40.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687714557.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.781 kcal (2) G-P(sol) polarization free energy of solvation -30.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds