Wall clock time and date at job start Mon Mar 30 2020 02:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99971 * 2 1 4 4 H 1.48496 * 109.46742 * 269.99684 * 3 2 1 5 5 H 1.48498 * 109.47047 * 29.99714 * 3 2 1 6 6 H 1.48501 * 109.47091 * 149.99621 * 3 2 1 7 7 C 1.37875 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99687 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00286 * 180.02562 * 7 2 1 10 10 N 1.46903 * 109.47216 * 185.20723 * 9 7 2 11 11 C 1.49558 * 111.00007 * 174.83849 * 10 9 7 12 12 C 1.50436 * 85.03226 * 210.88508 * 11 10 9 13 13 H 1.08999 * 113.72740 * 283.82853 * 12 11 10 14 14 C 1.51824 * 124.09678 * 139.47014 * 12 11 10 15 15 C 1.53950 * 106.23769 * 206.52074 * 14 12 11 16 16 C 1.52372 * 112.55871 * 56.80694 * 15 14 12 17 17 C 1.54256 * 112.13264 * 306.47927 * 16 15 14 18 18 C 1.43583 * 110.99915 * 83.20402 * 10 9 7 19 19 H 1.09001 * 112.04768 * 36.41964 * 18 10 9 20 20 H 0.97001 * 120.00029 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47692 * 65.20842 * 9 7 2 22 22 H 1.09004 * 109.47218 * 305.20554 * 9 7 2 23 23 H 1.08996 * 113.94636 * 324.91189 * 11 10 9 24 24 H 1.09011 * 113.93966 * 96.72162 * 11 10 9 25 25 H 1.08998 * 110.09549 * 325.70260 * 14 12 11 26 26 H 1.09000 * 110.08957 * 87.23161 * 14 12 11 27 27 H 1.09006 * 108.86802 * 177.60204 * 15 14 12 28 28 H 1.09004 * 108.86848 * 296.01287 * 15 14 12 29 29 H 1.09005 * 108.94354 * 67.16167 * 16 15 14 30 30 H 1.09001 * 108.95139 * 185.79590 * 16 15 14 31 31 H 1.08999 * 110.18473 * 175.79877 * 17 16 15 32 32 H 1.08995 * 110.18974 * 297.55331 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0013 -2.5733 -0.1241 11 6 5.4910 -2.6036 -0.2524 12 6 5.2638 -3.8381 -1.0814 13 1 5.0198 -4.7227 -0.4932 14 6 6.0296 -4.1633 -2.3514 15 6 5.1008 -5.0522 -3.1984 16 6 3.7603 -4.3881 -3.4880 17 6 3.0587 -3.9095 -2.2003 18 6 4.0238 -2.9886 -1.4984 19 1 4.3063 -2.1754 -2.1670 20 1 -0.4850 0.8400 -0.0004 21 1 3.8746 -0.7629 0.9341 22 1 3.8752 -0.6017 -0.8386 23 1 5.9040 -1.7645 -0.8123 24 1 6.0122 -2.7886 0.6870 25 1 6.2655 -3.2465 -2.8917 26 1 6.9462 -4.7009 -2.1087 27 1 5.5942 -5.2772 -4.1441 28 1 4.9235 -5.9860 -2.6648 29 1 3.9238 -3.5312 -4.1415 30 1 3.1143 -5.1024 -3.9984 31 1 2.1416 -3.3751 -2.4480 32 1 2.8356 -4.7593 -1.5553 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687714557.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:14 Heat of formation + Delta-G solvation = 18.891686 kcal Electronic energy + Delta-G solvation = -12737.483406 eV Core-core repulsion = 10698.264694 eV Total energy + Delta-G solvation = -2039.218712 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.21078 -36.72560 -34.90075 -32.29096 -31.06653 -27.96746 -26.11127 -23.93892 -21.75542 -21.32404 -20.92552 -18.98705 -16.81089 -16.32378 -16.00484 -15.74024 -14.95193 -14.82326 -14.46983 -14.31065 -13.47584 -13.35688 -13.01746 -12.81031 -12.61780 -12.30390 -12.10860 -11.87214 -11.82158 -11.43030 -11.34795 -11.00907 -10.83264 -10.24559 -9.74143 -8.33857 -6.38027 1.28463 1.31167 1.42736 2.29369 2.98895 3.03469 3.47038 3.81475 4.10066 4.16373 4.30512 4.39986 4.45173 4.57170 4.63486 4.72427 4.75133 4.77467 4.82882 5.01447 5.06404 5.23267 5.26411 5.29689 5.37683 5.41556 5.44073 5.61647 5.72103 6.08310 6.52813 6.67217 7.25626 8.83281 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.050753 B = 0.010500 C = 0.009564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.561234 B = 2666.045266 C = 2927.087158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.251 1.251 7 C -0.517 4.517 8 H 0.029 0.971 9 C 0.133 3.867 10 N -0.470 5.470 11 C 0.002 3.998 12 C -0.105 4.105 13 H 0.098 0.902 14 C -0.097 4.097 15 C -0.110 4.110 16 C -0.106 4.106 17 C -0.099 4.099 18 C 0.015 3.985 19 H 0.045 0.955 20 H 0.268 0.732 21 H 0.025 0.975 22 H -0.003 1.003 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.144 -6.886 -6.620 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.774 3.226 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.174 1.174 7 C -0.556 4.556 8 H 0.047 0.953 9 C 0.005 3.995 10 N -0.192 5.192 11 C -0.126 4.126 12 C -0.124 4.124 13 H 0.117 0.883 14 C -0.134 4.134 15 C -0.148 4.148 16 C -0.144 4.144 17 C -0.137 4.137 18 C -0.095 4.095 19 H 0.063 0.937 20 H 0.077 0.923 21 H 0.043 0.957 22 H 0.014 0.986 23 H 0.089 0.911 24 H 0.110 0.890 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.586 -7.128 -6.075 16.501 hybrid contribution -0.394 1.587 -0.307 1.664 sum 13.192 -5.541 -6.382 15.667 Atomic orbital electron populations 1.70058 1.08157 1.28206 1.52390 1.25931 0.95708 1.03315 0.94178 0.85655 0.79396 0.78329 0.79234 1.19064 1.20248 1.17421 1.21152 0.91079 0.93074 1.50256 0.95253 1.20506 0.94886 0.88700 0.95399 1.69283 1.08264 1.20868 1.20789 1.23648 0.90254 0.97897 1.00831 1.22692 0.96511 0.96233 0.96938 0.88344 1.21398 0.98232 1.00330 0.93479 1.21454 0.94177 0.98542 1.00610 1.21489 0.97165 1.00526 0.95251 1.21185 0.97318 0.97848 0.97356 1.22836 0.98402 0.97497 0.90735 0.93675 0.92330 0.95667 0.98565 0.91130 0.89041 0.91881 0.89376 0.89816 0.91644 0.92564 0.90707 0.95188 0.92438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.20 13.96 21.45 0.30 -60.90 16 2 C 0.01 0.36 5.47 84.65 0.46 0.82 16 3 Si 0.95 45.48 27.37 68.60 1.88 47.36 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.25 -11.20 6.69 99.48 0.67 -10.54 16 7 C -0.52 -31.74 9.75 25.60 0.25 -31.49 16 8 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 9 C 0.13 6.77 3.70 85.56 0.32 7.09 16 10 N -0.47 -20.80 6.34 ******* -7.07 -27.87 16 11 C 0.00 0.05 7.39 72.53 0.54 0.59 16 12 C -0.10 -3.05 3.67 -10.80 -0.04 -3.09 16 13 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 14 C -0.10 -2.07 6.09 30.53 0.19 -1.88 16 15 C -0.11 -2.25 5.78 30.71 0.18 -2.07 16 16 C -0.11 -2.76 5.84 30.81 0.18 -2.58 16 17 C -0.10 -3.60 6.11 30.28 0.18 -3.41 16 18 C 0.02 0.59 2.42 33.41 0.08 0.67 16 19 H 0.05 1.80 7.17 -2.39 -0.02 1.78 16 20 H 0.27 16.01 8.31 -92.71 -0.77 15.23 16 21 H 0.03 1.28 7.56 -2.39 -0.02 1.26 16 22 H 0.00 -0.17 6.60 -2.38 -0.02 -0.18 16 23 H 0.07 2.19 7.79 -2.39 -0.02 2.17 16 24 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 25 H 0.06 1.36 8.07 -2.39 -0.02 1.34 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 29 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 2.10 8.12 -2.39 -0.02 2.08 16 Total: -1.00 -69.66 251.61 -1.53 -71.20 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.02 Total: 5.57 kcal Atomic # 6 Polarization: -37.69 SS G_CDS: 2.33 Total: -35.35 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -6.77 Total: -88.77 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.36 kcal Total: -69.66 -1.53 -71.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687714557.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.087 kcal (2) G-P(sol) polarization free energy of solvation -69.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds