Wall clock time and date at job start Mon Mar 30 2020 02:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 120.00092 * 2 1 4 4 H 1.48501 * 109.47449 * 239.99748 * 3 2 1 5 5 H 1.48496 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47248 * 119.99948 * 3 2 1 7 7 C 1.37875 * 120.00359 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00688 * 180.02562 * 7 2 1 9 9 C 1.50711 * 119.99462 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46811 * 184.90897 * 9 7 2 11 11 C 1.50023 * 110.99954 * 184.75268 * 10 9 7 12 12 C 1.50397 * 83.18423 * 148.18805 * 11 10 9 13 13 H 1.08997 * 112.96527 * 77.61730 * 12 11 10 14 14 C 1.51429 * 125.15392 * 221.06700 * 12 11 10 15 15 C 1.54053 * 106.08848 * 158.63431 * 14 12 11 16 16 C 1.52343 * 112.62569 * 303.88050 * 15 14 12 17 17 C 1.54281 * 112.27817 * 53.05605 * 16 15 14 18 18 C 1.43978 * 111.00108 * 280.52588 * 10 9 7 19 19 H 1.09001 * 112.58093 * 324.60841 * 18 10 9 20 20 H 0.97001 * 119.99961 * 0.02562 * 1 2 3 21 21 H 1.08990 * 109.47153 * 64.90691 * 9 7 2 22 22 H 1.09002 * 109.47094 * 304.90533 * 9 7 2 23 23 H 1.08997 * 114.22358 * 34.64322 * 11 10 9 24 24 H 1.08989 * 114.22890 * 261.73750 * 11 10 9 25 25 H 1.09005 * 110.12279 * 39.49074 * 14 12 11 26 26 H 1.09004 * 110.12446 * 277.77855 * 14 12 11 27 27 H 1.09003 * 108.85208 * 183.07046 * 15 14 12 28 28 H 1.09001 * 108.76895 * 64.63236 * 15 14 12 29 29 H 1.09001 * 108.90546 * 173.74697 * 16 15 14 30 30 H 1.08999 * 108.90383 * 292.36349 * 16 15 14 31 31 H 1.09000 * 110.20406 * 61.98314 * 17 16 15 32 32 H 1.09001 * 110.20145 * 183.92555 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2011 -3.6131 0.1197 11 6 1.4981 -4.9337 0.0076 12 6 2.7972 -5.3699 -0.6121 13 1 3.5806 -5.5493 0.1242 14 6 2.9267 -6.2717 -1.8217 15 6 4.3274 -6.0050 -2.4050 16 6 4.5542 -4.5355 -2.7366 17 6 4.2540 -3.6122 -1.5375 18 6 2.8197 -3.9015 -1.1481 19 1 2.1393 -3.7594 -1.9877 20 1 -0.4850 0.8401 -0.0004 21 1 0.6922 -2.5961 -0.9302 22 1 0.5597 -2.5196 0.8431 23 1 0.6524 -4.9332 -0.6799 24 1 1.2783 -5.4060 0.9650 25 1 2.1610 -6.0248 -2.5572 26 1 2.8378 -7.3160 -1.5222 27 1 4.4484 -6.5939 -3.3142 28 1 5.0759 -6.3216 -1.6786 29 1 5.5927 -4.3974 -3.0373 30 1 3.9062 -4.2569 -3.5676 31 1 4.9240 -3.8416 -0.7089 32 1 4.3597 -2.5678 -1.8309 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687714558.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:17 Heat of formation + Delta-G solvation = 33.306465 kcal Electronic energy + Delta-G solvation = -12693.621954 eV Core-core repulsion = 10655.028313 eV Total energy + Delta-G solvation = -2038.593640 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.46067 -35.27072 -32.77859 -30.67479 -28.91692 -26.20398 -24.50875 -22.43862 -20.39840 -19.80635 -19.46326 -16.32510 -14.99870 -14.86090 -14.47515 -14.13197 -13.45144 -13.33519 -12.65841 -12.33378 -11.90243 -11.54665 -11.35157 -11.32264 -10.95131 -10.71218 -10.54281 -10.44722 -10.30543 -10.17772 -9.50332 -9.12933 -8.69718 -8.43337 -7.78986 -5.99799 -4.00718 3.35015 3.38542 3.41985 4.40707 4.55032 4.95077 5.01389 5.23735 5.35745 5.43959 5.59379 5.79435 5.81564 5.87867 5.98205 6.04244 6.16625 6.22216 6.30265 6.37444 6.44161 6.56635 6.61816 6.77052 6.87062 6.93288 7.28429 7.69561 7.98155 8.22972 8.49327 9.06162 9.62786 11.11594 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.050807 B = 0.010082 C = 0.008844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.973178 B = 2776.438266 C = 3165.132703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.503 4.503 8 H 0.061 0.939 9 C 0.154 3.846 10 N -0.455 5.455 11 C 0.005 3.995 12 C -0.134 4.134 13 H 0.093 0.907 14 C -0.104 4.104 15 C -0.113 4.113 16 C -0.114 4.114 17 C -0.093 4.093 18 C 0.037 3.963 19 H 0.059 0.941 20 H 0.261 0.739 21 H -0.006 1.006 22 H 0.033 0.967 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.258 -10.341 -4.402 12.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.028 3.972 10 N -0.177 5.177 11 C -0.124 4.124 12 C -0.152 4.152 13 H 0.111 0.889 14 C -0.143 4.143 15 C -0.150 4.150 16 C -0.152 4.152 17 C -0.131 4.131 18 C -0.073 4.073 19 H 0.077 0.923 20 H 0.071 0.929 21 H 0.012 0.988 22 H 0.051 0.949 23 H 0.079 0.921 24 H 0.095 0.905 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.499 -10.001 -3.814 12.522 hybrid contribution -0.253 1.008 -0.704 1.255 sum 6.246 -8.993 -4.518 11.845 Atomic orbital electron populations 1.69948 1.06049 1.26796 1.51175 1.24990 0.94870 0.99286 0.95497 0.86573 0.79470 0.82810 0.78650 1.20296 1.21326 1.20158 1.21047 0.93365 0.89946 1.49838 0.92119 1.20265 0.91555 0.89394 0.96007 1.68828 1.20532 1.01200 1.27129 1.23509 0.94836 0.94113 0.99901 1.22915 0.98865 0.96388 0.97082 0.88886 1.21370 0.96919 0.98920 0.97046 1.21468 0.97064 0.96392 1.00092 1.21532 1.00755 0.94555 0.98406 1.21261 0.95562 0.99167 0.97143 1.22898 0.96479 0.94629 0.93321 0.92331 0.92920 0.98809 0.94909 0.92053 0.90477 0.92116 0.92433 0.92703 0.92485 0.92357 0.92467 0.91711 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.29 55.43 0.74 -26.69 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.50 -14.69 9.10 -34.44 -0.31 -15.01 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.15 4.19 4.62 -4.97 -0.02 4.16 16 10 N -0.45 -10.34 6.14 -285.12 -1.75 -12.10 16 11 C 0.00 0.09 7.68 -9.12 -0.07 0.02 16 12 C -0.13 -2.19 3.33 -92.56 -0.31 -2.50 16 13 H 0.09 1.54 8.04 -51.93 -0.42 1.12 16 14 C -0.10 -1.40 6.11 -26.98 -0.16 -1.56 16 15 C -0.11 -1.39 5.79 -26.52 -0.15 -1.54 16 16 C -0.11 -1.57 5.80 -26.40 -0.15 -1.73 16 17 C -0.09 -1.62 6.16 -26.86 -0.17 -1.79 16 18 C 0.04 0.73 2.55 -74.03 -0.19 0.54 16 19 H 0.06 1.23 7.50 -51.93 -0.39 0.84 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H -0.01 -0.17 7.57 -51.93 -0.39 -0.56 16 22 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 24 H 0.08 1.32 8.14 -51.94 -0.42 0.90 16 25 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.10 8.02 -51.93 -0.42 0.69 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 255.37 15.07 3.85 3.85 Total: -1.00 -30.41 255.37 -9.20 -39.62 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -5.38 Total: -3.96 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -1.64 Total: -17.90 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: -1.02 Total: -38.79 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.41 -9.20 -39.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687714558.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.922 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds