Wall clock time and date at job start Mon Mar 30 2020 02:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.47058 * 111.00287 * 170.00178 * 11 10 9 13 13 C 1.53747 * 107.94581 * 123.86186 * 12 11 10 14 14 H 1.09001 * 115.04361 * 245.32683 * 13 12 11 15 15 C 1.53807 * 113.17913 * 108.68192 * 13 12 11 16 16 C 1.53728 * 87.30823 * 280.79361 * 15 13 12 17 17 C 1.53582 * 87.29106 * 334.48225 * 16 15 13 18 18 H 1.09008 * 116.01359 * 267.03501 * 17 16 15 19 19 C 1.47159 * 111.00622 * 291.66469 * 11 10 9 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 24 24 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 25 25 H 1.08997 * 109.77292 * 243.49142 * 12 11 10 26 26 H 1.08997 * 109.76762 * 4.22502 * 12 11 10 27 27 H 1.08993 * 113.57771 * 35.39947 * 15 13 12 28 28 H 1.08996 * 113.57532 * 166.10867 * 15 13 12 29 29 H 1.09000 * 113.58579 * 89.08759 * 16 15 13 30 30 H 1.09009 * 113.57852 * 219.80436 * 16 15 13 31 31 H 1.09004 * 110.00349 * 338.58636 * 19 11 10 32 32 H 1.09000 * 110.00400 * 99.93758 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 2.4183 -6.0677 -0.2166 13 6 2.2643 -7.0474 0.9582 14 1 3.1498 -7.1607 1.5836 15 6 1.5404 -8.3481 0.5708 16 6 0.2242 -7.5603 0.6721 17 6 0.9459 -6.6220 1.6507 18 1 0.8479 -6.8670 2.7083 19 6 0.8087 -5.1314 1.2948 20 1 -0.4850 0.8400 0.0004 21 1 0.6245 -2.5529 0.8956 22 1 0.6244 -2.5609 -0.8844 23 1 2.8721 -3.6081 -0.8798 24 1 2.8721 -3.6002 0.9002 25 1 2.1538 -6.5657 -1.1494 26 1 3.4473 -5.7118 -0.2678 27 1 1.7676 -8.6893 -0.4390 28 1 1.6354 -9.1382 1.3156 29 1 -0.0677 -7.0771 -0.2603 30 1 -0.5886 -8.1260 1.1277 31 1 1.2677 -4.5189 2.0710 32 1 -0.2437 -4.8692 1.1863 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688306083.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:40 Heat of formation + Delta-G solvation = -3.791646 kcal Electronic energy + Delta-G solvation = -12376.482701 eV Core-core repulsion = 10336.280366 eV Total energy + Delta-G solvation = -2040.202335 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.51182 -36.92636 -34.91046 -31.62614 -30.26556 -27.80631 -25.76849 -24.46793 -23.10348 -21.33509 -19.60651 -18.57682 -17.26679 -16.56857 -16.12992 -15.59449 -14.95216 -14.65953 -14.31286 -14.03404 -13.94406 -13.14309 -12.92499 -12.83200 -12.65118 -12.51559 -12.24818 -11.78516 -11.49432 -11.39892 -11.18738 -10.98718 -10.92229 -10.57996 -9.17165 -8.21895 -6.34159 1.38997 1.39931 1.53359 2.39135 3.11223 3.16076 3.41132 3.67639 3.72782 3.97322 4.25772 4.40698 4.47739 4.55694 4.61725 4.77663 4.79540 4.88088 4.95265 4.98056 5.05147 5.13457 5.15879 5.42052 5.43899 5.62793 5.64314 5.77025 6.08635 6.28147 6.32763 6.83241 7.35360 8.90749 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.087981 B = 0.007189 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 318.175254 B = 3893.807086 C = 4045.515050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.038 3.962 10 C 0.078 3.922 11 N -0.545 5.545 12 C 0.055 3.945 13 C -0.135 4.135 14 H 0.095 0.905 15 C -0.112 4.112 16 C -0.128 4.128 17 C -0.121 4.121 18 H 0.120 0.880 19 C 0.055 3.945 20 H 0.264 0.736 21 H -0.010 1.010 22 H -0.010 1.010 23 H 0.062 0.938 24 H 0.020 0.980 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.972 -14.791 2.649 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.050 4.050 11 N -0.270 5.270 12 C -0.072 4.072 13 C -0.154 4.154 14 H 0.113 0.887 15 C -0.150 4.150 16 C -0.165 4.165 17 C -0.140 4.140 18 H 0.138 0.862 19 C -0.073 4.073 20 H 0.073 0.927 21 H 0.008 0.992 22 H 0.009 0.991 23 H 0.080 0.920 24 H 0.038 0.962 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.098 0.902 31 H 0.048 0.952 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.482 -14.653 2.232 15.225 hybrid contribution 0.618 1.301 0.578 1.552 sum 4.101 -13.352 2.810 14.247 Atomic orbital electron populations 1.70124 1.07922 1.27802 1.51431 1.26008 0.95782 1.03484 0.94508 0.85333 0.78987 0.78409 0.77898 1.18529 1.20189 1.20207 1.21660 0.93518 0.92294 1.50986 0.92176 1.18888 0.94162 0.92081 0.94835 1.22170 0.95217 0.88826 0.98790 1.63084 1.28434 1.02298 1.33155 1.22537 0.95122 0.90845 0.98690 1.23511 0.97539 0.97200 0.97185 0.88701 1.22784 0.94569 0.95091 1.02520 1.22762 0.97595 0.97170 0.98964 1.23598 0.97485 0.92546 1.00384 0.86206 1.22491 0.98575 0.96678 0.89526 0.92687 0.99165 0.99136 0.91982 0.96200 0.90266 0.93081 0.90782 0.88116 0.91228 0.90199 0.95229 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.46 13.29 21.45 0.28 -58.17 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 45.15 29.54 68.60 2.03 47.17 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.55 -32.31 9.11 25.60 0.23 -32.07 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 9 C 0.04 2.13 5.00 29.85 0.15 2.28 16 10 C 0.08 3.51 4.44 86.31 0.38 3.89 16 11 N -0.55 -21.18 4.95 -891.81 -4.42 -25.60 16 12 C 0.06 1.67 6.00 86.52 0.52 2.19 16 13 C -0.14 -3.24 5.13 -9.63 -0.05 -3.29 16 14 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 15 C -0.11 -2.11 7.57 31.11 0.24 -1.88 16 16 C -0.13 -2.93 7.28 31.04 0.23 -2.70 16 17 C -0.12 -3.15 5.02 -9.66 -0.05 -3.20 16 18 H 0.12 2.62 8.14 -2.38 -0.02 2.60 16 19 C 0.06 1.99 5.33 86.54 0.46 2.45 16 20 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 21 H -0.01 -0.61 7.46 -2.39 -0.02 -0.62 16 22 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 23 H 0.06 2.73 8.03 -2.39 -0.02 2.71 16 24 H 0.02 0.89 7.87 -2.38 -0.02 0.87 16 25 H 0.08 2.25 7.71 -2.39 -0.02 2.23 16 26 H 0.05 1.51 7.53 -2.39 -0.02 1.50 16 27 H 0.07 1.31 7.96 -2.39 -0.02 1.30 16 28 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.92 7.69 -2.39 -0.02 1.90 16 30 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 31 H 0.03 1.15 7.53 -2.39 -0.02 1.13 16 32 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -66.16 256.14 1.53 -64.63 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.06 Total: 3.84 kcal Atomic # 6 Polarization: -34.45 SS G_CDS: 2.57 Total: -31.88 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -4.13 Total: -83.77 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -66.16 1.53 -64.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688306083.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.836 kcal (2) G-P(sol) polarization free energy of solvation -66.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds