Wall clock time and date at job start Mon Mar 30 2020 02:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99728 * 2 1 4 4 H 1.48503 * 109.46924 * 269.99300 * 3 2 1 5 5 H 1.48494 * 109.47424 * 29.99609 * 3 2 1 6 6 H 1.48497 * 109.47173 * 149.99873 * 3 2 1 7 7 C 1.37873 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00337 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00145 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47315 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47283 * 179.97438 * 10 9 7 12 12 C 1.49660 * 111.00230 * 169.99711 * 11 10 9 13 13 C 1.50779 * 104.63625 * 247.55551 * 12 11 10 14 14 H 1.09004 * 112.33869 * 78.32030 * 13 12 11 15 15 C 1.49457 * 131.22740 * 236.69582 * 13 12 11 16 16 C 1.56696 * 80.81377 * 135.19718 * 15 13 12 17 17 C 1.49763 * 81.08480 * 314.01454 * 16 15 13 18 18 H 1.09006 * 114.09228 * 290.65346 * 17 16 15 19 19 C 1.50410 * 111.02943 * 51.80233 * 11 10 9 20 20 H 0.96996 * 120.00238 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46967 * 60.00399 * 9 7 2 22 22 H 1.09002 * 109.47090 * 300.00606 * 9 7 2 23 23 H 1.08999 * 109.47159 * 60.00049 * 10 9 7 24 24 H 1.09002 * 109.47154 * 300.00098 * 10 9 7 25 25 H 1.09004 * 110.39882 * 128.76894 * 12 11 10 26 26 H 1.08998 * 110.50012 * 6.39888 * 12 11 10 27 27 H 1.09002 * 114.64598 * 22.20815 * 15 13 12 28 28 H 1.08996 * 114.64463 * 248.18404 * 15 13 12 29 29 H 1.09000 * 114.59673 * 67.06311 * 16 15 13 30 30 H 1.08998 * 114.59176 * 200.91777 * 16 15 13 31 31 H 1.09005 * 110.91628 * 30.34418 * 19 11 10 32 32 H 1.09000 * 111.03727 * 266.58726 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4905 -2.6365 0.0009 12 6 6.0269 -4.0124 0.2435 13 6 6.6835 -3.9320 1.5985 14 1 5.9596 -3.9698 2.4125 15 6 8.0815 -4.2303 2.0349 16 6 7.8659 -2.8766 2.7941 17 6 7.3228 -2.4811 1.4557 18 1 8.0786 -2.4035 0.6740 19 6 6.0303 -1.7684 1.1043 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6800 0.8912 22 1 3.8752 -0.6803 -0.8888 23 1 3.6586 -3.1501 -0.8892 24 1 3.6579 -3.1505 0.8907 25 1 6.7603 -4.2742 -0.5192 26 1 5.2166 -4.7412 0.2565 27 1 8.8244 -4.1914 1.2382 28 1 8.1796 -5.1029 2.6806 29 1 7.1235 -2.9167 3.5911 30 1 8.7852 -2.3658 3.0805 31 1 5.3498 -1.7531 1.9557 32 1 6.2272 -0.7579 0.7463 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688306092.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:43 Heat of formation + Delta-G solvation = 78.662480 kcal Electronic energy + Delta-G solvation = -12462.636238 eV Core-core repulsion = 10426.009382 eV Total energy + Delta-G solvation = -2036.626856 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.13248 -35.86478 -32.88589 -30.45910 -28.67169 -26.58898 -23.57698 -23.13843 -20.65856 -20.54491 -19.43048 -16.81184 -15.27515 -14.88222 -14.66403 -14.22363 -14.04102 -13.23997 -12.70487 -12.61963 -12.28232 -11.78185 -11.68507 -11.19169 -11.09666 -11.06176 -10.79827 -10.57019 -10.13020 -9.77686 -9.67219 -9.22846 -8.88500 -8.52748 -7.86622 -6.03695 -4.01827 3.33065 3.39703 3.44440 3.74394 4.31998 4.41855 4.46807 4.75124 4.93196 5.30789 5.38727 5.46374 5.55320 5.63633 5.77749 5.84334 5.94431 6.00103 6.08360 6.12042 6.17475 6.28516 6.45005 6.48860 6.75646 7.14728 7.26295 7.44747 7.61082 7.86036 8.54022 9.00297 9.58802 11.09728 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.061793 B = 0.008485 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.014456 B = 3299.021104 C = 3544.124258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.011 4.011 10 C 0.062 3.938 11 N -0.523 5.523 12 C 0.056 3.944 13 C -0.179 4.179 14 H 0.091 0.909 15 C -0.106 4.106 16 C -0.112 4.112 17 C -0.157 4.157 18 H 0.103 0.897 19 C 0.058 3.942 20 H 0.263 0.737 21 H 0.016 0.984 22 H 0.019 0.981 23 H 0.069 0.931 24 H 0.026 0.974 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.544 -5.877 4.145 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.049 4.049 10 C -0.066 4.066 11 N -0.248 5.248 12 C -0.072 4.072 13 C -0.198 4.198 14 H 0.109 0.891 15 C -0.144 4.144 16 C -0.150 4.150 17 C -0.176 4.176 18 H 0.121 0.879 19 C -0.069 4.069 20 H 0.073 0.927 21 H 0.035 0.965 22 H 0.038 0.962 23 H 0.087 0.913 24 H 0.044 0.956 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.488 -5.556 3.595 16.843 hybrid contribution -0.151 0.613 0.711 0.951 sum 15.337 -4.944 4.307 16.680 Atomic orbital electron populations 1.69914 1.06303 1.26904 1.51189 1.24999 0.94724 0.99177 0.94489 0.86749 0.80301 0.83475 0.78610 1.20201 1.21448 1.19001 1.21089 0.89410 0.94520 1.50949 0.91125 1.19626 0.96719 0.91764 0.96761 1.22311 0.84242 1.00269 0.99736 1.65840 1.10254 1.05923 1.42733 1.22147 0.98792 0.91618 0.94614 1.23754 0.96194 1.00902 0.98995 0.89063 1.22636 0.95092 0.97063 0.99564 1.22759 1.00675 0.96379 0.95205 1.23710 0.98130 0.97426 0.98383 0.87906 1.22466 0.93416 0.97305 0.93705 0.92730 0.96546 0.96224 0.91299 0.95567 0.90956 0.92485 0.89218 0.91834 0.89362 0.91634 0.92945 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.33 13.96 55.43 0.77 -27.56 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.27 3.78 -27.88 -0.11 -0.38 16 10 C 0.06 1.32 4.76 -3.83 -0.02 1.30 16 11 N -0.52 -9.58 5.50 -231.25 -1.27 -10.85 16 12 C 0.06 0.84 6.62 -3.39 -0.02 0.81 16 13 C -0.18 -2.33 4.27 -105.06 -0.45 -2.78 16 14 H 0.09 1.26 7.39 -51.93 -0.38 0.88 16 15 C -0.11 -1.08 8.09 -40.11 -0.32 -1.41 16 16 C -0.11 -1.21 8.07 -41.37 -0.33 -1.55 16 17 C -0.16 -2.09 4.43 -103.05 -0.46 -2.54 16 18 H 0.10 1.33 7.60 -51.93 -0.39 0.93 16 19 C 0.06 0.98 4.97 -2.50 -0.01 0.97 16 20 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 21 H 0.02 0.41 5.75 -51.93 -0.30 0.11 16 22 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 23 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 24 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 27 H 0.09 0.85 7.61 -51.93 -0.40 0.45 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.96 7.52 -51.93 -0.39 0.57 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.94 7.41 -51.93 -0.38 0.55 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 251.39 15.07 3.79 3.79 Total: -1.00 -30.68 251.39 -8.69 -39.36 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -5.16 Total: -3.09 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -2.15 Total: -19.25 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.50 Total: -38.40 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.68 -8.69 -39.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688306092.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.027 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds