Wall clock time and date at job start Mon Mar 30 2020 02:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99728 * 2 1 4 4 H 1.48503 * 109.46924 * 269.99300 * 3 2 1 5 5 H 1.48494 * 109.47424 * 29.99609 * 3 2 1 6 6 H 1.48497 * 109.47173 * 149.99873 * 3 2 1 7 7 C 1.37873 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00337 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00145 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47315 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47283 * 179.97438 * 10 9 7 12 12 C 1.49660 * 111.00230 * 169.99711 * 11 10 9 13 13 C 1.50779 * 104.63625 * 247.55551 * 12 11 10 14 14 H 1.09004 * 112.33869 * 78.32030 * 13 12 11 15 15 C 1.49457 * 131.22740 * 236.69582 * 13 12 11 16 16 C 1.56696 * 80.81377 * 135.19718 * 15 13 12 17 17 C 1.49763 * 81.08480 * 314.01454 * 16 15 13 18 18 H 1.09006 * 114.09228 * 290.65346 * 17 16 15 19 19 C 1.50410 * 111.02943 * 51.80233 * 11 10 9 20 20 H 0.96996 * 120.00238 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46967 * 60.00399 * 9 7 2 22 22 H 1.09002 * 109.47090 * 300.00606 * 9 7 2 23 23 H 1.08999 * 109.47159 * 60.00049 * 10 9 7 24 24 H 1.09002 * 109.47154 * 300.00098 * 10 9 7 25 25 H 1.09004 * 110.39882 * 128.76894 * 12 11 10 26 26 H 1.08998 * 110.50012 * 6.39888 * 12 11 10 27 27 H 1.09002 * 114.64598 * 22.20815 * 15 13 12 28 28 H 1.08996 * 114.64463 * 248.18404 * 15 13 12 29 29 H 1.09000 * 114.59673 * 67.06311 * 16 15 13 30 30 H 1.08998 * 114.59176 * 200.91777 * 16 15 13 31 31 H 1.09005 * 110.91628 * 30.34418 * 19 11 10 32 32 H 1.09000 * 111.03727 * 266.58726 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 7 5.4905 -2.6365 0.0009 12 6 6.0269 -4.0124 0.2435 13 6 6.6835 -3.9320 1.5985 14 1 5.9596 -3.9698 2.4125 15 6 8.0815 -4.2303 2.0349 16 6 7.8659 -2.8766 2.7941 17 6 7.3228 -2.4811 1.4557 18 1 8.0786 -2.4035 0.6740 19 6 6.0303 -1.7684 1.1043 20 1 -0.4850 0.8400 0.0004 21 1 3.8745 -0.6800 0.8912 22 1 3.8752 -0.6803 -0.8888 23 1 3.6586 -3.1501 -0.8892 24 1 3.6579 -3.1505 0.8907 25 1 6.7603 -4.2742 -0.5192 26 1 5.2166 -4.7412 0.2565 27 1 8.8244 -4.1914 1.2382 28 1 8.1796 -5.1029 2.6806 29 1 7.1235 -2.9167 3.5911 30 1 8.7852 -2.3658 3.0805 31 1 5.3498 -1.7531 1.9557 32 1 6.2272 -0.7579 0.7463 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688306092.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:43 Heat of formation + Delta-G solvation = 58.254473 kcal Electronic energy + Delta-G solvation = -12463.521196 eV Core-core repulsion = 10426.009382 eV Total energy + Delta-G solvation = -2037.511814 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.20889 -37.33154 -34.99238 -32.34241 -29.87585 -28.24498 -25.00370 -24.41646 -22.20664 -21.65038 -20.81847 -19.02817 -16.69954 -16.32058 -16.10011 -15.93266 -15.34976 -14.73338 -14.62415 -13.90748 -13.77913 -13.37324 -12.91839 -12.72554 -12.46574 -12.26281 -12.09760 -12.00009 -11.76040 -11.61480 -11.44791 -11.41342 -10.81372 -9.92575 -9.32800 -8.34194 -6.39160 1.33317 1.34471 1.47211 2.32757 2.69181 2.99007 3.00913 3.56224 3.81571 3.86435 4.20569 4.35493 4.36663 4.42290 4.50767 4.64788 4.80082 4.83406 4.87237 4.97441 5.00411 5.09554 5.17406 5.23223 5.26458 5.44044 5.46911 5.56644 5.88934 6.07897 6.24579 6.67879 7.25744 8.82584 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.061793 B = 0.008485 C = 0.007899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.014456 B = 3299.021104 C = 3544.124258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.008 3.992 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.249 1.249 7 C -0.537 4.537 8 H 0.031 0.969 9 C -0.001 4.001 10 C 0.075 3.925 11 N -0.533 5.533 12 C 0.053 3.947 13 C -0.179 4.179 14 H 0.078 0.922 15 C -0.089 4.089 16 C -0.107 4.107 17 C -0.154 4.154 18 H 0.114 0.886 19 C 0.051 3.949 20 H 0.268 0.732 21 H 0.020 0.980 22 H 0.018 0.982 23 H 0.060 0.940 24 H 0.016 0.984 25 H 0.090 0.910 26 H 0.051 0.949 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.428 -5.512 4.597 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.173 1.173 7 C -0.575 4.575 8 H 0.050 0.950 9 C -0.039 4.039 10 C -0.054 4.054 11 N -0.258 5.258 12 C -0.074 4.074 13 C -0.198 4.198 14 H 0.096 0.904 15 C -0.126 4.126 16 C -0.145 4.145 17 C -0.173 4.173 18 H 0.132 0.868 19 C -0.076 4.076 20 H 0.077 0.923 21 H 0.038 0.962 22 H 0.037 0.963 23 H 0.079 0.921 24 H 0.035 0.965 25 H 0.108 0.892 26 H 0.069 0.931 27 H 0.124 0.876 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.390 -5.213 4.051 19.539 hybrid contribution -1.109 0.422 0.560 1.312 sum 17.281 -4.791 4.611 18.516 Atomic orbital electron populations 1.70057 1.08234 1.28326 1.52294 1.25984 0.95643 1.03492 0.93838 0.85622 0.79374 0.78124 0.79331 1.19084 1.20512 1.17305 1.21403 0.91832 0.93293 1.51018 0.95038 1.19476 0.93704 0.94142 0.96584 1.21994 0.86719 0.97723 0.98915 1.65798 1.07709 1.08367 1.43887 1.22197 0.99072 0.89485 0.96613 1.23781 0.97459 1.01304 0.97269 0.90353 1.22641 0.92931 0.97318 0.99749 1.22776 1.01221 0.96637 0.93833 1.23783 0.96874 0.96121 1.00491 0.86831 1.22481 0.95249 0.97199 0.92674 0.92304 0.96194 0.96317 0.92129 0.96548 0.89216 0.93083 0.87648 0.90168 0.89722 0.89597 0.94596 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 2 C 0.01 0.46 5.47 84.65 0.46 0.92 16 3 Si 0.95 45.72 27.47 68.60 1.88 47.61 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.25 -11.24 6.54 99.48 0.65 -10.58 16 7 C -0.54 -32.36 9.66 25.60 0.25 -32.11 16 8 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 9 C 0.00 -0.07 3.78 29.85 0.11 0.04 16 10 C 0.07 3.23 4.76 86.30 0.41 3.64 16 11 N -0.53 -19.11 5.50 -885.54 -4.87 -23.98 16 12 C 0.05 1.51 6.62 85.04 0.56 2.07 16 13 C -0.18 -4.24 4.27 -20.15 -0.09 -4.33 16 14 H 0.08 2.07 7.39 -2.39 -0.02 2.05 16 15 C -0.09 -1.46 8.09 21.93 0.18 -1.28 16 16 C -0.11 -1.95 8.07 21.11 0.17 -1.78 16 17 C -0.15 -3.67 4.43 -18.85 -0.08 -3.75 16 18 H 0.11 2.52 7.60 -2.38 -0.02 2.50 16 19 C 0.05 1.66 4.97 85.19 0.42 2.09 16 20 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 21 H 0.02 0.98 5.75 -2.39 -0.01 0.96 16 22 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 23 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 24 H 0.02 0.72 8.08 -2.39 -0.02 0.70 16 25 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 26 H 0.05 1.50 7.66 -2.39 -0.02 1.48 16 27 H 0.11 1.48 7.61 -2.39 -0.02 1.46 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.62 7.52 -2.39 -0.02 1.61 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.04 1.28 7.41 -2.38 -0.02 1.26 16 32 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -66.82 251.39 0.73 -66.09 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: 1.01 Total: 5.25 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 2.40 Total: -34.48 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -4.57 Total: -84.46 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.61 kcal Total: -66.82 0.73 -66.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688306092.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.340 kcal (2) G-P(sol) polarization free energy of solvation -66.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds