Wall clock time and date at job start Mon Mar 30 2020 02:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00053 * 2 1 4 4 H 1.48503 * 109.47061 * 240.00487 * 3 2 1 5 5 H 1.48498 * 109.47231 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46761 * 120.00586 * 3 2 1 7 7 C 1.37878 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00093 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47282 * 180.02562 * 9 7 2 11 11 N 1.46890 * 109.47255 * 179.97438 * 10 9 7 12 12 C 1.50865 * 111.49573 * 71.48157 * 11 10 9 13 13 C 1.50778 * 104.04236 * 111.82727 * 12 11 10 14 14 H 1.09002 * 112.66219 * 282.40166 * 13 12 11 15 15 C 1.49465 * 130.85729 * 124.14072 * 13 12 11 16 16 C 1.56702 * 80.75466 * 224.77514 * 15 13 12 17 17 C 1.49763 * 81.08516 * 45.96267 * 16 15 13 18 18 H 1.08998 * 114.09288 * 69.34179 * 17 16 15 19 19 C 1.50054 * 111.00003 * 189.99933 * 11 10 9 20 20 H 0.97004 * 119.99726 * 359.97438 * 1 2 3 21 21 H 1.08996 * 109.47542 * 60.00324 * 9 7 2 22 22 H 1.09007 * 109.46931 * 299.99972 * 9 7 2 23 23 H 1.09005 * 109.46974 * 59.99788 * 10 9 7 24 24 H 1.09003 * 109.46627 * 300.00147 * 10 9 7 25 25 H 1.08999 * 109.95714 * 353.58422 * 12 11 10 26 26 H 1.09009 * 111.41686 * 230.78598 * 12 11 10 27 27 H 1.08995 * 114.64563 * 337.73826 * 15 13 12 28 28 H 1.09005 * 114.64388 * 111.81603 * 15 13 12 29 29 H 1.09002 * 114.59137 * 292.91875 * 16 15 13 30 30 H 1.08998 * 114.59514 * 159.01350 * 16 15 13 31 31 H 1.09000 * 110.94938 * 93.40076 * 19 11 10 32 32 H 1.09003 * 110.94929 * 329.67872 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9342 0.0001 12 6 0.8477 -5.1904 -1.3306 13 6 1.6036 -6.3663 -1.8956 14 1 2.5713 -6.0836 -2.3101 15 6 1.1248 -7.7015 -2.3668 16 6 2.3655 -8.1609 -1.5271 17 6 1.7676 -7.1969 -0.5493 18 1 0.8252 -7.5306 -0.1151 19 6 2.4366 -6.0897 0.2434 20 1 -0.4850 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8897 23 1 2.8719 -3.6044 0.8895 24 1 2.8718 -3.6044 -0.8906 25 1 0.9611 -4.3198 -1.9766 26 1 -0.2066 -5.4394 -1.2087 27 1 0.1615 -8.0085 -1.9596 28 1 1.2171 -7.8645 -3.4406 29 1 3.3284 -7.8541 -1.9355 30 1 2.3383 -9.2036 -1.2107 31 1 2.4779 -6.3394 1.3035 32 1 3.4330 -5.8792 -0.1453 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688306099.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:46 Heat of formation + Delta-G solvation = 75.662050 kcal Electronic energy + Delta-G solvation = -12344.812034 eV Core-core repulsion = 10308.055069 eV Total energy + Delta-G solvation = -2036.756964 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.05172 -35.62417 -32.92834 -30.04832 -28.55399 -26.23645 -23.51331 -23.22504 -20.97029 -20.26821 -19.36126 -16.37510 -15.38478 -14.71520 -14.56305 -14.19279 -14.13094 -13.09002 -12.54122 -12.35330 -12.05502 -11.72021 -11.39610 -11.12487 -11.04319 -10.95730 -10.74293 -10.52755 -10.47632 -9.84311 -9.32379 -9.11859 -8.84862 -8.30963 -7.72626 -5.96409 -3.99100 3.35095 3.39281 3.41682 3.81537 4.33835 4.46280 4.53532 4.79764 4.99508 5.39092 5.48740 5.51808 5.60410 5.67094 5.82612 5.88883 6.00356 6.04072 6.15199 6.24555 6.30009 6.36920 6.52329 6.62488 7.00009 7.37650 7.53255 7.80538 7.92982 8.12881 8.46772 9.08193 9.64252 11.14953 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.083297 B = 0.007041 C = 0.006886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.066535 B = 3975.563260 C = 4065.485536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.030 3.970 10 C 0.056 3.944 11 N -0.522 5.522 12 C 0.059 3.941 13 C -0.177 4.177 14 H 0.089 0.911 15 C -0.108 4.108 16 C -0.113 4.113 17 C -0.157 4.157 18 H 0.104 0.896 19 C 0.054 3.946 20 H 0.261 0.739 21 H 0.016 0.984 22 H 0.024 0.976 23 H 0.059 0.941 24 H 0.019 0.981 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 -13.929 -3.280 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.071 4.071 11 N -0.246 5.246 12 C -0.068 4.068 13 C -0.196 4.196 14 H 0.107 0.893 15 C -0.145 4.145 16 C -0.150 4.150 17 C -0.176 4.176 18 H 0.122 0.878 19 C -0.074 4.074 20 H 0.070 0.930 21 H 0.034 0.966 22 H 0.042 0.958 23 H 0.078 0.922 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.873 -13.704 -2.835 14.286 hybrid contribution 1.118 1.070 -0.606 1.661 sum 3.991 -12.634 -3.441 13.689 Atomic orbital electron populations 1.69971 1.06025 1.26647 1.50600 1.24997 0.94832 0.99147 0.95326 0.86655 0.79573 0.83170 0.78569 1.20320 1.21245 1.20232 1.21175 0.92915 0.91149 1.50970 0.92910 1.19056 0.93911 0.89966 0.97803 1.22473 0.96810 0.89086 0.98759 1.65820 1.28198 1.02018 1.28560 1.22324 0.98340 0.96193 0.89930 1.23757 1.01889 0.94455 0.99497 0.89264 1.22660 0.97889 0.94696 0.99290 1.22755 0.97572 0.98120 0.96584 1.23654 1.01914 0.97197 0.94873 0.87751 1.22440 0.94478 0.90665 0.99777 0.92953 0.96568 0.95788 0.92200 0.96236 0.91649 0.90748 0.89118 0.91830 0.89564 0.91746 0.90845 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.45 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -15.24 9.11 -34.44 -0.31 -15.55 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.81 5.04 -27.88 -0.14 0.67 16 10 C 0.06 1.25 4.57 -3.83 -0.02 1.23 16 11 N -0.52 -10.11 5.33 -230.46 -1.23 -11.34 16 12 C 0.06 1.04 6.26 -2.70 -0.02 1.02 16 13 C -0.18 -2.48 4.25 -105.35 -0.45 -2.92 16 14 H 0.09 1.29 7.38 -51.93 -0.38 0.90 16 15 C -0.11 -1.19 8.10 -40.10 -0.32 -1.51 16 16 C -0.11 -1.20 8.07 -41.57 -0.34 -1.53 16 17 C -0.16 -2.08 4.41 -103.13 -0.46 -2.53 16 18 H 0.10 1.39 7.60 -51.93 -0.39 0.99 16 19 C 0.05 0.84 6.41 -2.71 -0.02 0.83 16 20 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 21 H 0.02 0.46 7.07 -51.93 -0.37 0.09 16 22 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 1.32 8.09 -51.93 -0.42 0.90 16 24 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 25 H 0.07 1.27 6.84 -51.93 -0.36 0.91 16 26 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 27 H 0.09 0.95 7.61 -51.93 -0.40 0.55 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.90 7.52 -51.93 -0.39 0.51 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.04 0.66 7.87 -51.93 -0.41 0.25 16 LS Contribution 255.96 15.07 3.86 3.86 Total: -1.00 -30.45 255.96 -9.01 -39.46 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -5.19 Total: -3.57 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -2.17 Total: -18.68 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: -0.49 Total: -38.06 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.45 -9.01 -39.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688306099.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.124 kcal (2) G-P(sol) polarization free energy of solvation -30.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds