Wall clock time and date at job start Mon Mar 30 2020 02:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00273 * 2 1 4 4 H 1.48499 * 109.47380 * 270.00024 * 3 2 1 5 5 H 1.48498 * 109.47221 * 29.99917 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00017 * 3 2 1 7 7 C 1.38820 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99878 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99551 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99646 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47290 * 180.02562 * 10 9 7 12 12 C 1.53953 * 113.58191 * 175.00165 * 11 10 9 13 13 C 1.52903 * 86.78369 * 139.33584 * 12 11 10 14 14 C 1.52910 * 121.14315 * 209.37282 * 13 12 11 15 15 C 1.53950 * 86.78717 * 209.38472 * 14 13 12 16 16 C 1.52917 * 121.13601 * 100.81371 * 13 12 11 17 17 C 1.52905 * 88.04187 * 335.09639 * 13 12 11 18 18 H 0.97003 * 119.99955 * 0.02562 * 1 2 3 19 19 H 0.96996 * 120.00583 * 359.97438 * 9 7 2 20 20 H 1.08997 * 109.47470 * 59.99606 * 10 9 7 21 21 H 1.09002 * 109.47101 * 299.99986 * 10 9 7 22 22 H 1.09000 * 112.82541 * 43.90669 * 11 10 9 23 23 H 1.08997 * 113.66155 * 24.86247 * 12 11 10 24 24 H 1.09003 * 113.74418 * 253.81943 * 12 11 10 25 25 H 1.09007 * 113.65999 * 323.86104 * 14 13 12 26 26 H 1.09002 * 113.66292 * 94.90614 * 14 13 12 27 27 H 1.09001 * 113.57502 * 270.13001 * 15 14 13 28 28 H 1.09001 * 113.65122 * 139.34775 * 15 14 13 29 29 H 1.09001 * 113.65915 * 265.09556 * 16 13 12 30 30 H 1.08993 * 113.66018 * 36.14469 * 16 13 12 31 31 H 1.09007 * 113.66063 * 139.37650 * 17 13 12 32 32 H 1.08999 * 113.66512 * 270.43076 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3254 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 1.7319 -6.2012 -0.1242 13 6 0.7196 -6.6875 0.9135 14 6 1.0574 -7.8291 1.8732 15 6 -0.4469 -8.1564 1.8757 16 6 -0.5231 -7.4753 0.4972 17 6 0.6122 -5.2446 1.4080 18 1 -0.4850 0.8401 -0.0004 19 1 0.3555 -2.3880 0.0002 20 1 2.6846 -3.7146 0.8894 21 1 2.6846 -3.7146 -0.8905 22 1 0.2390 -4.6706 -0.6982 23 1 2.7632 -6.2212 0.2279 24 1 1.6094 -6.6623 -1.1043 25 1 1.6740 -8.6088 1.4258 26 1 1.4334 -7.4919 2.8391 27 1 -1.0056 -7.6334 2.6520 28 1 -0.6621 -9.2246 1.8468 29 1 -1.4097 -6.8554 0.3639 30 1 -0.3508 -8.1554 -0.3369 31 1 -0.4058 -4.9403 1.6515 32 1 1.3289 -4.9958 2.1906 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691901189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:22 Heat of formation + Delta-G solvation = 40.637252 kcal Electronic energy + Delta-G solvation = -12168.500413 eV Core-core repulsion = 10130.224660 eV Total energy + Delta-G solvation = -2038.275754 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.19161 -35.63824 -33.55779 -30.68238 -26.41864 -25.66555 -25.45495 -23.36944 -21.83169 -19.72931 -17.71940 -16.93109 -15.36273 -15.09934 -14.91553 -14.20493 -13.31343 -13.08010 -12.75215 -12.59005 -12.30980 -11.81188 -11.47036 -11.13977 -10.91798 -10.78482 -10.50637 -10.37428 -10.11145 -9.88697 -9.81691 -9.63236 -9.26960 -8.79085 -6.83513 -5.70335 -2.98009 3.47358 3.52063 3.54072 4.57632 4.61321 4.67091 4.78563 4.89301 5.11990 5.20369 5.56695 5.63325 5.71601 5.74397 5.76815 5.93238 5.99635 6.06579 6.13270 6.15731 6.25922 6.30321 6.39571 6.49458 6.67437 6.74238 6.91247 7.09818 7.75618 8.49274 9.59948 10.20536 10.55385 11.52916 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.085403 B = 0.006705 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.778903 B = 4174.851185 C = 4288.845215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.162 3.838 11 C -0.110 4.110 12 C -0.120 4.120 13 C -0.107 4.107 14 C -0.130 4.130 15 C -0.139 4.139 16 C -0.118 4.118 17 C -0.103 4.103 18 H 0.254 0.746 19 H 0.383 0.617 20 H 0.018 0.982 21 H 0.017 0.983 22 H 0.087 0.913 23 H 0.080 0.920 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.572 -15.245 2.185 15.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.035 3.965 11 C -0.129 4.129 12 C -0.158 4.158 13 C -0.107 4.107 14 C -0.167 4.167 15 C -0.177 4.177 16 C -0.155 4.155 17 C -0.141 4.141 18 H 0.064 0.936 19 H 0.217 0.783 20 H 0.036 0.964 21 H 0.034 0.966 22 H 0.105 0.895 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.710 -15.121 2.195 15.296 hybrid contribution 0.146 0.985 -0.026 0.996 sum 0.857 -14.136 2.169 14.327 Atomic orbital electron populations 1.69664 1.05117 1.25520 1.58132 1.24736 0.95518 0.97647 1.03297 0.86187 0.78630 0.83905 0.77489 1.21769 1.21806 1.20805 1.19267 0.91032 0.84342 1.42197 0.91273 1.42373 1.05876 1.00037 1.89331 1.20652 0.93108 0.85301 0.97447 1.22655 0.99102 0.94037 0.97065 1.22779 0.98274 0.96571 0.98199 1.22470 0.96718 0.94178 0.97322 1.22752 0.96200 0.98189 0.99545 1.22800 0.97062 0.99941 0.97871 1.22633 0.97456 0.98482 0.96933 1.22677 1.01643 0.92322 0.97413 0.93597 0.78324 0.96420 0.96550 0.89494 0.90176 0.91954 0.90435 0.91642 0.90363 0.91992 0.91384 0.90254 0.91712 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.10 13.06 55.49 0.72 -28.38 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 3 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.47 5.60 -59.91 -0.34 -19.81 16 10 C 0.16 3.47 6.09 -4.04 -0.02 3.44 16 11 C -0.11 -1.90 3.76 -89.64 -0.34 -2.24 16 12 C -0.12 -1.70 7.40 -26.28 -0.19 -1.89 16 13 C -0.11 -1.41 1.11 -154.71 -0.17 -1.58 16 14 C -0.13 -1.47 7.84 -26.28 -0.21 -1.67 16 15 C -0.14 -1.48 8.08 -25.75 -0.21 -1.69 16 16 C -0.12 -1.38 7.84 -26.28 -0.21 -1.59 16 17 C -0.10 -1.63 7.39 -26.28 -0.19 -1.83 16 18 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 19 H 0.38 10.67 7.67 -40.82 -0.31 10.35 16 20 H 0.02 0.38 7.85 -51.93 -0.41 -0.02 16 21 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 23 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.33 7.90 -51.93 -0.41 0.92 16 LS Contribution 263.61 15.07 3.97 3.97 Total: -1.00 -30.66 263.61 -7.78 -38.44 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.32 Total: 4.53 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -1.79 Total: -16.69 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.39 Total: -48.18 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.66 -7.78 -38.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691901189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.077 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds