Wall clock time and date at job start Mon Mar 30 2020 02:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00273 * 2 1 4 4 H 1.48499 * 109.47380 * 270.00024 * 3 2 1 5 5 H 1.48498 * 109.47221 * 29.99917 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00017 * 3 2 1 7 7 C 1.38820 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99878 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99551 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99646 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47290 * 180.02562 * 10 9 7 12 12 C 1.53953 * 113.58191 * 175.00165 * 11 10 9 13 13 C 1.52903 * 86.78369 * 139.33584 * 12 11 10 14 14 C 1.52910 * 121.14315 * 209.37282 * 13 12 11 15 15 C 1.53950 * 86.78717 * 209.38472 * 14 13 12 16 16 C 1.52917 * 121.13601 * 100.81371 * 13 12 11 17 17 C 1.52905 * 88.04187 * 335.09639 * 13 12 11 18 18 H 0.97003 * 119.99955 * 0.02562 * 1 2 3 19 19 H 0.96996 * 120.00583 * 359.97438 * 9 7 2 20 20 H 1.08997 * 109.47470 * 59.99606 * 10 9 7 21 21 H 1.09002 * 109.47101 * 299.99986 * 10 9 7 22 22 H 1.09000 * 112.82541 * 43.90669 * 11 10 9 23 23 H 1.08997 * 113.66155 * 24.86247 * 12 11 10 24 24 H 1.09003 * 113.74418 * 253.81943 * 12 11 10 25 25 H 1.09007 * 113.65999 * 323.86104 * 14 13 12 26 26 H 1.09002 * 113.66292 * 94.90614 * 14 13 12 27 27 H 1.09001 * 113.57502 * 270.13001 * 15 14 13 28 28 H 1.09001 * 113.65122 * 139.34775 * 15 14 13 29 29 H 1.09001 * 113.65915 * 265.09556 * 16 13 12 30 30 H 1.08993 * 113.66018 * 36.14469 * 16 13 12 31 31 H 1.09007 * 113.66063 * 139.37650 * 17 13 12 32 32 H 1.08999 * 113.66512 * 270.43076 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0001 9 7 1.3254 -2.3880 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 6 1.7319 -6.2012 -0.1242 13 6 0.7196 -6.6875 0.9135 14 6 1.0574 -7.8291 1.8732 15 6 -0.4469 -8.1564 1.8757 16 6 -0.5231 -7.4753 0.4972 17 6 0.6122 -5.2446 1.4080 18 1 -0.4850 0.8401 -0.0004 19 1 0.3555 -2.3880 0.0002 20 1 2.6846 -3.7146 0.8894 21 1 2.6846 -3.7146 -0.8905 22 1 0.2390 -4.6706 -0.6982 23 1 2.7632 -6.2212 0.2279 24 1 1.6094 -6.6623 -1.1043 25 1 1.6740 -8.6088 1.4258 26 1 1.4334 -7.4919 2.8391 27 1 -1.0056 -7.6334 2.6520 28 1 -0.6621 -9.2246 1.8468 29 1 -1.4097 -6.8554 0.3639 30 1 -0.3508 -8.1554 -0.3369 31 1 -0.4058 -4.9403 1.6515 32 1 1.3289 -4.9958 2.1906 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691901189.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:21 Heat of formation + Delta-G solvation = 22.624630 kcal Electronic energy + Delta-G solvation = -12169.281499 eV Core-core repulsion = 10130.224660 eV Total energy + Delta-G solvation = -2039.056840 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.30366 -37.14341 -35.31911 -32.72945 -28.20652 -26.67604 -26.57297 -25.13799 -23.27442 -21.12612 -19.07375 -18.75622 -16.82863 -16.40104 -16.07770 -15.92756 -15.20567 -14.72730 -14.42491 -13.69085 -13.57111 -12.98470 -12.90520 -12.83822 -12.59922 -12.29521 -12.07315 -11.93117 -11.70782 -11.51068 -10.97319 -10.95685 -10.89079 -10.47778 -9.00683 -7.96382 -5.25586 1.45964 1.48613 1.57164 2.55340 3.36287 3.52050 3.57376 3.75399 3.85680 3.96232 4.00098 4.30093 4.49853 4.62720 4.66294 4.84179 4.87545 4.93050 4.96100 4.98760 5.01553 5.11365 5.17393 5.21986 5.29182 5.46350 5.53459 5.61619 5.74437 6.26274 7.31670 8.08851 8.32798 9.27576 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.085403 B = 0.006705 C = 0.006527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.778903 B = 4174.851185 C = 4288.845215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.250 4.250 8 H 0.074 0.926 9 N -0.746 5.746 10 C 0.162 3.838 11 C -0.115 4.115 12 C -0.108 4.108 13 C -0.104 4.104 14 C -0.124 4.124 15 C -0.134 4.134 16 C -0.119 4.119 17 C -0.107 4.107 18 H 0.252 0.748 19 H 0.373 0.627 20 H 0.018 0.982 21 H 0.016 0.984 22 H 0.074 0.926 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.462 -16.527 2.270 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.269 4.269 3 Si 0.806 3.194 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.382 4.382 8 H 0.092 0.908 9 N -0.388 5.388 10 C 0.036 3.964 11 C -0.134 4.134 12 C -0.146 4.146 13 C -0.104 4.104 14 C -0.161 4.161 15 C -0.171 4.171 16 C -0.156 4.156 17 C -0.144 4.144 18 H 0.061 0.939 19 H 0.204 0.796 20 H 0.036 0.964 21 H 0.034 0.966 22 H 0.093 0.907 23 H 0.105 0.895 24 H 0.095 0.905 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.632 -16.437 2.282 16.675 hybrid contribution -0.119 1.356 -0.058 1.362 sum 1.513 -15.081 2.223 15.319 Atomic orbital electron populations 1.69829 1.06736 1.26164 1.59523 1.25625 0.96456 1.01273 1.03576 0.85082 0.77662 0.79125 0.77548 1.21207 1.21970 1.19379 1.19690 0.91526 0.85559 1.41379 0.90760 1.42604 1.05599 1.01303 1.89313 1.20813 0.93795 0.84756 0.97070 1.22610 0.98368 0.94316 0.98059 1.22736 0.98654 0.93792 0.99412 1.22411 0.97407 0.93242 0.97373 1.22774 0.96990 0.97415 0.98930 1.22780 0.96450 1.01036 0.96843 1.22710 0.96179 0.98428 0.98303 1.22646 1.00674 0.94812 0.96279 0.93928 0.79573 0.96376 0.96636 0.90729 0.89508 0.90547 0.88702 0.91737 0.90813 0.89997 0.92382 0.88648 0.92855 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.43 13.06 21.65 0.28 -61.15 16 2 C -0.08 -4.60 5.50 84.87 0.47 -4.13 16 3 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 4 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.25 -14.64 9.99 84.04 0.84 -13.80 16 8 H 0.07 4.18 7.83 -2.91 -0.02 4.15 16 9 N -0.75 -40.37 5.60 -343.45 -1.92 -42.29 16 10 C 0.16 6.94 6.09 86.38 0.53 7.47 16 11 C -0.11 -3.96 3.76 -10.16 -0.04 -4.00 16 12 C -0.11 -2.85 7.40 30.88 0.23 -2.62 16 13 C -0.10 -2.56 1.11 -52.31 -0.06 -2.62 16 14 C -0.12 -2.46 7.84 30.88 0.24 -2.21 16 15 C -0.13 -2.49 8.08 31.23 0.25 -2.24 16 16 C -0.12 -2.54 7.84 30.89 0.24 -2.29 16 17 C -0.11 -3.36 7.39 30.88 0.23 -3.13 16 18 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 19 H 0.37 21.39 7.67 -92.71 -0.71 20.67 16 20 H 0.02 0.78 7.85 -2.39 -0.02 0.77 16 21 H 0.02 0.67 8.14 -2.39 -0.02 0.66 16 22 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 23 H 0.09 2.18 8.10 -2.39 -0.02 2.16 16 24 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.08 2.45 7.90 -2.39 -0.02 2.44 16 Total: -1.00 -64.97 263.61 3.68 -61.29 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.37 Total: 22.40 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 2.93 Total: -29.57 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -1.64 Total: -103.44 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -64.97 3.68 -61.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691901189.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.911 kcal (2) G-P(sol) polarization free energy of solvation -64.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds