Wall clock time and date at job start Mon Mar 30 2020 02:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47170 * 2 1 4 4 N 1.46904 * 109.47252 * 119.99555 * 2 1 3 5 5 C 1.52993 * 109.47418 * 239.99687 * 2 1 3 6 6 C 1.50707 * 109.47330 * 174.99969 * 5 2 1 7 7 C 1.40128 * 126.00667 * 269.68881 * 6 5 2 8 8 N 1.30930 * 108.40232 * 179.85162 * 7 6 5 9 9 N 1.40101 * 108.26690 * 0.40739 * 8 7 6 10 10 C 1.37388 * 126.11906 * 179.72204 * 9 8 7 11 11 H 1.07999 * 119.99941 * 174.16763 * 10 9 8 12 12 C 1.38990 * 120.00169 * 354.16098 * 10 9 8 13 13 N 1.31275 * 120.00219 * 5.93534 * 12 10 9 14 14 Si 1.86803 * 119.99959 * 185.93830 * 12 10 9 15 15 H 1.48500 * 109.47130 * 94.98056 * 14 12 10 16 16 H 1.48498 * 109.47312 * 214.97860 * 14 12 10 17 17 H 1.48503 * 109.47149 * 334.98232 * 14 12 10 18 18 C 1.35240 * 126.00834 * 89.99746 * 6 5 2 19 19 H 1.09002 * 109.47149 * 299.99850 * 1 2 3 20 20 H 1.08998 * 109.47315 * 60.00516 * 1 2 3 21 21 H 1.09003 * 109.46770 * 180.02562 * 1 2 3 22 22 H 1.00901 * 110.99846 * 296.05438 * 4 2 1 23 23 H 1.00907 * 110.99761 * 60.00089 * 4 2 1 24 24 H 1.08998 * 109.47237 * 295.00155 * 5 2 1 25 25 H 1.09001 * 109.47485 * 55.00048 * 5 2 1 26 26 H 1.08001 * 125.79801 * 359.97438 * 7 6 5 27 27 H 0.97004 * 120.00848 * 180.02562 * 13 12 10 28 28 H 1.08002 * 126.20657 * 359.95167 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0400 -0.7213 -1.2491 6 6 3.5420 -0.6149 -1.3126 7 6 4.2699 0.4014 -1.9457 8 7 5.5462 0.1565 -1.7865 9 7 5.6775 -1.0304 -1.0538 10 6 6.8583 -1.6276 -0.6843 11 1 6.8467 -2.4931 -0.0384 12 6 8.0678 -1.1181 -1.1418 13 7 8.0909 -0.0003 -1.8298 14 14 9.6604 -2.0239 -0.7777 15 1 10.0028 -2.9036 -1.9241 16 1 10.7522 -1.0399 -0.5656 17 1 9.4924 -2.8483 0.4459 18 6 4.4243 -1.4867 -0.7735 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.7502 -0.1989 2.0373 23 1 1.6962 -1.6479 1.2229 24 1 1.7517 -1.7715 -1.2055 25 1 1.6055 -0.2619 -2.1369 26 1 3.8495 1.2447 -2.4735 27 1 8.9350 0.3552 -2.1495 28 1 4.1800 -2.3818 -0.2208 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693518372.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:06 Heat of formation + Delta-G solvation = 67.046105 kcal Electronic energy + Delta-G solvation = -12029.411892 eV Core-core repulsion = 9888.740969 eV Total energy + Delta-G solvation = -2140.670923 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.26451 -36.15677 -33.33329 -30.53002 -29.48867 -28.36923 -25.91933 -23.97760 -20.42183 -20.27543 -18.65119 -16.98703 -15.68714 -15.28942 -14.37833 -14.03307 -13.40034 -12.95675 -12.81277 -12.66703 -12.09421 -11.77967 -11.48494 -11.17153 -11.03015 -10.72383 -10.59539 -10.43418 -10.21498 -9.23035 -8.46919 -8.18519 -7.86826 -6.83738 -6.39169 -4.07660 3.06771 3.14583 3.18898 3.84495 3.97344 4.42051 4.96768 5.00533 5.19089 5.36551 5.46705 5.65340 5.96310 6.13468 6.19185 6.42437 6.43671 6.62856 6.73168 7.04996 7.20020 7.38514 7.63906 7.87457 7.87980 8.08380 8.43339 8.89137 9.64608 9.89203 10.58479 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.076347 B = 0.008554 C = 0.008028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.658341 B = 3272.592405 C = 3487.093493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.092 3.908 3 H 0.076 0.924 4 N -0.830 5.830 5 C -0.014 4.014 6 C -0.259 4.259 7 C -0.053 4.053 8 N -0.265 5.265 9 N -0.160 5.160 10 C -0.330 4.330 11 H 0.112 0.888 12 C 0.048 3.952 13 N -0.781 5.781 14 Si 0.929 3.071 15 H -0.273 1.273 16 H -0.278 1.278 17 H -0.265 1.265 18 C -0.026 4.026 19 H 0.046 0.954 20 H 0.057 0.943 21 H 0.049 0.951 22 H 0.329 0.671 23 H 0.332 0.668 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.143 0.857 27 H 0.270 0.730 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.800 -2.035 3.175 9.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.020 4.020 3 H 0.094 0.906 4 N -0.357 5.357 5 C -0.053 4.053 6 C -0.273 4.273 7 C -0.229 4.229 8 N -0.095 5.095 9 N 0.072 4.928 10 C -0.461 4.461 11 H 0.129 0.871 12 C -0.168 4.168 13 N -0.409 5.409 14 Si 0.753 3.247 15 H -0.199 1.199 16 H -0.203 1.203 17 H -0.189 1.189 18 C -0.176 4.176 19 H 0.065 0.935 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.141 0.859 23 H 0.144 0.856 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.160 0.840 27 H 0.081 0.919 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.650 -1.340 2.529 7.239 hybrid contribution -1.190 -0.719 0.636 1.529 sum -7.840 -2.059 3.165 8.702 Atomic orbital electron populations 1.22716 0.99232 1.01263 1.01444 1.21523 0.89864 0.98917 0.91653 0.90603 1.58725 1.67710 1.05577 1.03718 1.19617 0.92662 0.98315 0.94725 1.19050 0.93525 1.01037 1.13698 1.23326 0.92498 1.00791 1.06285 1.78093 1.15606 0.99649 1.16130 1.44755 1.03761 1.13537 1.30702 1.19804 0.81397 1.12975 1.31933 0.87053 1.25558 0.99887 0.95668 0.95658 1.70218 1.26952 1.15799 1.27906 0.85904 0.80413 0.79156 0.79178 1.19851 1.20309 1.18917 1.21660 0.84898 1.02212 1.08786 0.93534 0.92411 0.93151 0.85908 0.85629 0.93410 0.92705 0.83964 0.91931 0.84560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 9.48 37.16 0.35 -1.87 15 2 C 0.09 1.41 3.34 -67.71 -0.23 1.19 15 3 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 4 N -0.83 -12.52 8.86 -4.67 -0.04 -12.56 15 5 C -0.01 -0.25 5.35 -27.88 -0.15 -0.40 15 6 C -0.26 -5.96 5.10 -104.98 -0.54 -6.50 15 7 C -0.05 -1.35 11.96 -17.23 -0.21 -1.56 15 8 N -0.27 -7.84 10.44 30.69 0.32 -7.52 15 9 N -0.16 -4.60 3.73 -11.55 -0.04 -4.64 15 10 C -0.33 -9.26 10.24 -14.78 -0.15 -9.41 15 11 H 0.11 2.86 7.84 -52.49 -0.41 2.45 15 12 C 0.05 1.29 5.50 -17.51 -0.10 1.20 15 13 N -0.78 -22.73 11.84 55.49 0.66 -22.07 15 14 Si 0.93 19.96 29.56 -169.99 -5.02 14.94 15 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 16 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 17 H -0.26 -5.46 7.11 56.52 0.40 -5.06 15 18 C -0.03 -0.66 11.28 -16.65 -0.19 -0.84 15 19 H 0.05 0.50 8.14 -51.93 -0.42 0.08 15 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 22 H 0.33 4.29 9.07 -39.29 -0.36 3.93 15 23 H 0.33 4.46 9.00 -39.29 -0.35 4.11 15 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 26 H 0.14 3.19 8.06 -52.49 -0.42 2.77 15 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 15 28 H 0.14 3.06 8.06 -52.49 -0.42 2.64 15 LS Contribution 247.18 15.07 3.72 3.72 Total: -1.00 -32.09 247.18 -5.24 -37.34 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -3.64 Total: 8.99 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -1.20 Total: -18.19 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.89 Total: -46.80 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.09 -5.24 -37.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693518372.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.382 kcal (2) G-P(sol) polarization free energy of solvation -32.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds