Wall clock time and date at job start Mon Mar 30 2020 02:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47170 * 2 1 4 4 N 1.46904 * 109.47252 * 119.99555 * 2 1 3 5 5 C 1.52993 * 109.47418 * 239.99687 * 2 1 3 6 6 C 1.50707 * 109.47330 * 174.99969 * 5 2 1 7 7 C 1.40128 * 126.00667 * 269.68881 * 6 5 2 8 8 N 1.30930 * 108.40232 * 179.85162 * 7 6 5 9 9 N 1.40101 * 108.26690 * 0.40739 * 8 7 6 10 10 C 1.37388 * 126.11906 * 179.72204 * 9 8 7 11 11 H 1.07999 * 119.99941 * 174.16763 * 10 9 8 12 12 C 1.38990 * 120.00169 * 354.16098 * 10 9 8 13 13 N 1.31275 * 120.00219 * 5.93534 * 12 10 9 14 14 Si 1.86803 * 119.99959 * 185.93830 * 12 10 9 15 15 H 1.48500 * 109.47130 * 94.98056 * 14 12 10 16 16 H 1.48498 * 109.47312 * 214.97860 * 14 12 10 17 17 H 1.48503 * 109.47149 * 334.98232 * 14 12 10 18 18 C 1.35240 * 126.00834 * 89.99746 * 6 5 2 19 19 H 1.09002 * 109.47149 * 299.99850 * 1 2 3 20 20 H 1.08998 * 109.47315 * 60.00516 * 1 2 3 21 21 H 1.09003 * 109.46770 * 180.02562 * 1 2 3 22 22 H 1.00901 * 110.99846 * 296.05438 * 4 2 1 23 23 H 1.00907 * 110.99761 * 60.00089 * 4 2 1 24 24 H 1.08998 * 109.47237 * 295.00155 * 5 2 1 25 25 H 1.09001 * 109.47485 * 55.00048 * 5 2 1 26 26 H 1.08001 * 125.79801 * 359.97438 * 7 6 5 27 27 H 0.97004 * 120.00848 * 180.02562 * 13 12 10 28 28 H 1.08002 * 126.20657 * 359.95167 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0400 -0.7213 -1.2491 6 6 3.5420 -0.6149 -1.3126 7 6 4.2699 0.4014 -1.9457 8 7 5.5462 0.1565 -1.7865 9 7 5.6775 -1.0304 -1.0538 10 6 6.8583 -1.6276 -0.6843 11 1 6.8467 -2.4931 -0.0384 12 6 8.0678 -1.1181 -1.1418 13 7 8.0909 -0.0003 -1.8298 14 14 9.6604 -2.0239 -0.7777 15 1 10.0028 -2.9036 -1.9241 16 1 10.7522 -1.0399 -0.5656 17 1 9.4924 -2.8483 0.4459 18 6 4.4243 -1.4867 -0.7735 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.7502 -0.1989 2.0373 23 1 1.6962 -1.6479 1.2229 24 1 1.7517 -1.7715 -1.2055 25 1 1.6055 -0.2619 -2.1369 26 1 3.8495 1.2447 -2.4735 27 1 8.9350 0.3552 -2.1495 28 1 4.1800 -2.3818 -0.2208 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693518372.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:06 Heat of formation + Delta-G solvation = 44.037281 kcal Electronic energy + Delta-G solvation = -12030.409630 eV Core-core repulsion = 9888.740969 eV Total energy + Delta-G solvation = -2141.668661 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.23564 -37.44334 -35.30751 -32.42618 -31.28973 -29.58605 -27.69660 -25.76465 -22.31869 -21.70226 -20.53167 -18.93186 -17.32363 -16.91725 -16.02560 -15.37708 -15.10768 -14.77283 -14.46784 -13.82018 -13.54480 -13.47394 -13.00313 -12.92020 -12.71286 -12.29534 -12.20168 -11.96048 -11.68901 -11.17735 -10.45564 -9.96460 -9.31280 -8.78629 -8.39963 -6.18172 1.35994 1.39186 1.56392 1.91723 2.17947 2.51340 3.02209 3.15578 3.87506 4.20173 4.36055 4.52950 4.58682 4.65996 4.87939 5.02054 5.08962 5.10500 5.22985 5.35189 5.39787 5.56049 5.95852 6.07419 6.46231 6.56653 6.84266 6.90317 7.64222 7.85764 8.60862 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.076347 B = 0.008554 C = 0.008028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.658341 B = 3272.592405 C = 3487.093493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.097 3.903 3 H 0.054 0.946 4 N -0.849 5.849 5 C -0.014 4.014 6 C -0.242 4.242 7 C -0.070 4.070 8 N -0.319 5.319 9 N -0.190 5.190 10 C -0.366 4.366 11 H 0.126 0.874 12 C -0.005 4.005 13 N -0.832 5.832 14 Si 1.014 2.986 15 H -0.267 1.267 16 H -0.275 1.275 17 H -0.248 1.248 18 C -0.036 4.036 19 H 0.058 0.942 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.341 0.659 23 H 0.342 0.658 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.165 0.835 27 H 0.273 0.727 28 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.895 -3.113 3.894 11.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.014 4.014 3 H 0.072 0.928 4 N -0.380 5.380 5 C -0.053 4.053 6 C -0.255 4.255 7 C -0.246 4.246 8 N -0.149 5.149 9 N 0.041 4.959 10 C -0.496 4.496 11 H 0.144 0.856 12 C -0.215 4.215 13 N -0.461 5.461 14 Si 0.833 3.167 15 H -0.192 1.192 16 H -0.200 1.200 17 H -0.171 1.171 18 C -0.185 4.185 19 H 0.077 0.923 20 H 0.083 0.917 21 H 0.080 0.920 22 H 0.154 0.846 23 H 0.155 0.845 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.182 0.818 27 H 0.082 0.918 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.781 -2.430 3.263 8.780 hybrid contribution -1.007 -0.361 0.415 1.147 sum -8.788 -2.790 3.678 9.927 Atomic orbital electron populations 1.22547 0.96011 1.02378 1.02479 1.21330 0.92295 0.97223 0.90595 0.92782 1.58677 1.68535 1.06496 1.04246 1.19751 0.88811 0.99927 0.96761 1.19610 0.96232 0.98828 1.10827 1.23871 0.92052 1.02097 1.06535 1.77983 1.17904 1.01129 1.17869 1.45028 1.04950 1.13949 1.31967 1.20421 0.82188 1.13912 1.33098 0.85613 1.26739 1.03699 0.96242 0.94807 1.70386 1.28091 1.17929 1.29704 0.84663 0.74722 0.77704 0.79603 1.19161 1.19974 1.17129 1.22267 0.84359 1.03159 1.08677 0.92271 0.91684 0.91959 0.84644 0.84491 0.91860 0.91208 0.81755 0.91781 0.82424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 9.48 71.98 0.68 -2.85 15 2 C 0.10 2.75 3.34 44.91 0.15 2.90 15 3 H 0.05 1.76 8.14 -2.39 -0.02 1.74 15 4 N -0.85 -23.79 8.86 -168.69 -1.49 -25.29 15 5 C -0.01 -0.44 5.35 29.85 0.16 -0.28 15 6 C -0.24 -10.88 5.10 -20.10 -0.10 -10.99 15 7 C -0.07 -3.58 11.96 85.29 1.02 -2.56 15 8 N -0.32 -19.35 10.44 -56.80 -0.59 -19.94 15 9 N -0.19 -11.10 3.73 -190.44 -0.71 -11.81 15 10 C -0.37 -20.86 10.24 84.00 0.86 -20.00 15 11 H 0.13 6.47 7.84 -2.91 -0.02 6.44 15 12 C 0.00 -0.26 5.50 84.96 0.47 0.21 15 13 N -0.83 -49.88 11.84 21.66 0.26 -49.63 15 14 Si 1.01 41.12 29.56 68.60 2.03 43.15 15 15 H -0.27 -10.44 7.11 99.48 0.71 -9.73 15 16 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 17 H -0.25 -9.26 7.11 99.48 0.71 -8.55 15 18 C -0.04 -1.80 11.28 83.31 0.94 -0.86 15 19 H 0.06 1.07 8.14 -2.39 -0.02 1.05 15 20 H 0.06 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.06 1.13 8.14 -2.39 -0.02 1.11 15 22 H 0.34 8.17 9.07 -89.69 -0.81 7.36 15 23 H 0.34 8.28 9.00 -89.69 -0.81 7.47 15 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.07 2.08 8.14 -2.39 -0.02 2.06 15 26 H 0.17 7.36 8.06 -2.91 -0.02 7.33 15 27 H 0.27 15.00 8.31 -92.71 -0.77 14.23 15 28 H 0.16 6.90 8.06 -2.91 -0.02 6.88 15 Total: -1.00 -70.84 247.18 3.21 -67.63 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.46 Total: 30.32 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 4.18 Total: -34.43 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -2.54 Total: -106.67 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -70.84 3.21 -67.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693518372.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.668 kcal (2) G-P(sol) polarization free energy of solvation -70.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds