Wall clock time and date at job start Mon Mar 30 2020 02:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 5 5 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 6 6 C 1.50696 * 109.47344 * 184.99683 * 5 2 1 7 7 C 1.40135 * 126.00660 * 90.02032 * 6 5 2 8 8 N 1.30934 * 108.40119 * 180.02562 * 7 6 5 9 9 N 1.40087 * 108.26666 * 0.02562 * 8 7 6 10 10 C 1.37400 * 126.11907 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00027 * 179.97438 * 10 9 8 12 12 C 1.38987 * 119.99998 * 359.97438 * 10 9 8 13 13 N 1.31286 * 120.00098 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99945 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47226 * 89.99880 * 14 12 10 16 16 H 1.48503 * 109.46788 * 209.99840 * 14 12 10 17 17 H 1.48493 * 109.46841 * 329.99725 * 14 12 10 18 18 C 1.35232 * 126.01116 * 269.71524 * 6 5 2 19 19 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 21 21 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 22 22 H 1.00901 * 111.00367 * 296.04728 * 4 2 1 23 23 H 1.00903 * 110.99825 * 60.00772 * 4 2 1 24 24 H 1.09008 * 109.46873 * 304.99791 * 5 2 1 25 25 H 1.08997 * 109.47047 * 64.99480 * 5 2 1 26 26 H 1.08001 * 125.79936 * 359.97438 * 7 6 5 27 27 H 0.96996 * 120.00457 * 180.02562 * 13 12 10 28 28 H 1.08004 * 126.20651 * 0.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0400 -0.7213 1.2492 6 6 3.5419 -0.6150 1.3127 7 6 4.2699 0.4044 1.9409 8 7 5.5462 0.1568 1.7857 9 7 5.6773 -1.0294 1.0521 10 6 6.8582 -1.6257 0.6808 11 1 6.8441 -2.5446 0.1133 12 6 8.0708 -1.0465 1.0355 13 7 8.0879 0.0707 1.7248 14 14 9.6763 -1.8569 0.5300 15 1 10.0983 -1.3355 -0.7948 16 1 10.7232 -1.5525 1.5383 17 1 9.4834 -3.3268 0.4450 18 6 4.4241 -1.4897 0.7784 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.7501 -1.6649 -1.1909 23 1 1.6961 -0.2350 -2.0385 24 1 1.6054 -0.2617 2.1370 25 1 1.7516 -1.7715 1.2056 26 1 3.8495 1.2509 2.4636 27 1 8.9342 0.4752 1.9720 28 1 4.1799 -2.3877 0.2304 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693518376.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:09 Heat of formation + Delta-G solvation = 67.134007 kcal Electronic energy + Delta-G solvation = -12033.302063 eV Core-core repulsion = 9892.634951 eV Total energy + Delta-G solvation = -2140.667112 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.27039 -36.16218 -33.33380 -30.52674 -29.48505 -28.37176 -25.92395 -23.98197 -20.42818 -20.27710 -18.66070 -16.98799 -15.65749 -15.29142 -14.37736 -14.06307 -13.40030 -12.96701 -12.82100 -12.63668 -12.10242 -11.77834 -11.48197 -11.13992 -11.04838 -10.74012 -10.61416 -10.43852 -10.22164 -9.23444 -8.47310 -8.17791 -7.87274 -6.84366 -6.38649 -4.07734 3.06965 3.14371 3.18408 3.84055 3.97186 4.41744 4.96891 5.00329 5.19894 5.37077 5.46681 5.65655 5.95812 6.13507 6.18110 6.42273 6.43079 6.62268 6.72690 7.04220 7.19062 7.38275 7.64283 7.86826 7.88343 8.07824 8.42946 8.88972 9.64006 9.88931 10.58663 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.074432 B = 0.008603 C = 0.008070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.089858 B = 3254.054121 C = 3468.858237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.092 3.908 3 H 0.076 0.924 4 N -0.830 5.830 5 C -0.015 4.015 6 C -0.259 4.259 7 C -0.053 4.053 8 N -0.264 5.264 9 N -0.159 5.159 10 C -0.329 4.329 11 H 0.112 0.888 12 C 0.047 3.953 13 N -0.781 5.781 14 Si 0.930 3.070 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.265 1.265 18 C -0.028 4.028 19 H 0.049 0.951 20 H 0.057 0.943 21 H 0.046 0.954 22 H 0.332 0.668 23 H 0.329 0.671 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.143 0.857 27 H 0.270 0.730 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.748 -2.072 -3.173 9.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.020 4.020 3 H 0.094 0.906 4 N -0.358 5.358 5 C -0.054 4.054 6 C -0.273 4.273 7 C -0.229 4.229 8 N -0.094 5.094 9 N 0.073 4.927 10 C -0.460 4.460 11 H 0.129 0.871 12 C -0.168 4.168 13 N -0.409 5.409 14 Si 0.754 3.246 15 H -0.198 1.198 16 H -0.203 1.203 17 H -0.190 1.190 18 C -0.177 4.177 19 H 0.068 0.932 20 H 0.076 0.924 21 H 0.065 0.935 22 H 0.144 0.856 23 H 0.141 0.859 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.160 0.840 27 H 0.081 0.919 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.597 -1.327 -2.553 7.198 hybrid contribution -1.188 -0.737 -0.676 1.552 sum -7.785 -2.064 -3.229 8.677 Atomic orbital electron populations 1.22718 0.99248 1.01238 1.01461 1.21530 0.89851 0.99013 0.91559 0.90580 1.58731 1.67672 1.05846 1.03504 1.19629 0.92689 0.98283 0.94790 1.19043 0.93503 1.00731 1.14051 1.23329 0.92493 1.00686 1.06375 1.78099 1.15579 1.00152 1.15563 1.44755 1.03745 1.13776 1.30395 1.19800 0.81181 1.08608 1.36451 0.87065 1.25559 0.99932 0.95678 0.95650 1.70214 1.26966 1.14915 1.28821 0.85913 0.80433 0.79616 0.78640 1.19769 1.20296 1.18968 1.21649 0.84934 1.02173 1.08991 0.93186 0.92415 0.93503 0.85579 0.85944 0.92660 0.93410 0.83951 0.91917 0.84594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.23 9.48 37.16 0.35 -1.87 15 2 C 0.09 1.42 3.36 -67.71 -0.23 1.19 15 3 H 0.08 1.30 8.14 -51.93 -0.42 0.88 15 4 N -0.83 -12.58 8.89 -4.66 -0.04 -12.63 15 5 C -0.01 -0.26 5.31 -27.88 -0.15 -0.41 15 6 C -0.26 -5.96 5.10 -104.98 -0.54 -6.50 15 7 C -0.05 -1.35 11.96 -17.22 -0.21 -1.56 15 8 N -0.26 -7.81 10.42 30.70 0.32 -7.49 15 9 N -0.16 -4.57 3.73 -11.54 -0.04 -4.61 15 10 C -0.33 -9.23 10.26 -14.78 -0.15 -9.38 15 11 H 0.11 2.84 7.83 -52.48 -0.41 2.43 15 12 C 0.05 1.28 5.50 -17.51 -0.10 1.18 15 13 N -0.78 -22.74 11.82 55.49 0.66 -22.08 15 14 Si 0.93 19.95 29.55 -169.99 -5.02 14.93 15 15 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 16 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 18 C -0.03 -0.70 11.29 -16.65 -0.19 -0.89 15 19 H 0.05 0.56 8.14 -51.93 -0.42 0.13 15 20 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 21 H 0.05 0.51 8.14 -51.93 -0.42 0.08 15 22 H 0.33 4.52 8.98 -39.29 -0.35 4.17 15 23 H 0.33 4.28 9.04 -39.29 -0.36 3.92 15 24 H 0.05 0.90 8.14 -51.92 -0.42 0.48 15 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 15 26 H 0.14 3.19 8.06 -52.49 -0.42 2.77 15 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 28 H 0.14 3.04 8.06 -52.48 -0.42 2.62 15 LS Contribution 247.11 15.07 3.72 3.72 Total: -1.00 -32.08 247.11 -5.24 -37.32 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -3.64 Total: 9.07 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -1.20 Total: -18.24 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.89 Total: -46.82 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -32.08 -5.24 -37.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693518376.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.458 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds