Wall clock time and date at job start Mon Mar 30 2020 02:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46901 * 109.46769 * 239.99705 * 2 1 3 5 5 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 6 6 C 1.50696 * 109.47344 * 184.99683 * 5 2 1 7 7 C 1.40135 * 126.00660 * 90.02032 * 6 5 2 8 8 N 1.30934 * 108.40119 * 180.02562 * 7 6 5 9 9 N 1.40087 * 108.26666 * 0.02562 * 8 7 6 10 10 C 1.37400 * 126.11907 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00027 * 179.97438 * 10 9 8 12 12 C 1.38987 * 119.99998 * 359.97438 * 10 9 8 13 13 N 1.31286 * 120.00098 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99945 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47226 * 89.99880 * 14 12 10 16 16 H 1.48503 * 109.46788 * 209.99840 * 14 12 10 17 17 H 1.48493 * 109.46841 * 329.99725 * 14 12 10 18 18 C 1.35232 * 126.01116 * 269.71524 * 6 5 2 19 19 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 21 21 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 22 22 H 1.00901 * 111.00367 * 296.04728 * 4 2 1 23 23 H 1.00903 * 110.99825 * 60.00772 * 4 2 1 24 24 H 1.09008 * 109.46873 * 304.99791 * 5 2 1 25 25 H 1.08997 * 109.47047 * 64.99480 * 5 2 1 26 26 H 1.08001 * 125.79936 * 359.97438 * 7 6 5 27 27 H 0.96996 * 120.00457 * 180.02562 * 13 12 10 28 28 H 1.08004 * 126.20651 * 0.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0400 -0.7213 1.2492 6 6 3.5419 -0.6150 1.3127 7 6 4.2699 0.4044 1.9409 8 7 5.5462 0.1568 1.7857 9 7 5.6773 -1.0294 1.0521 10 6 6.8582 -1.6257 0.6808 11 1 6.8441 -2.5446 0.1133 12 6 8.0708 -1.0465 1.0355 13 7 8.0879 0.0707 1.7248 14 14 9.6763 -1.8569 0.5300 15 1 10.0983 -1.3355 -0.7948 16 1 10.7232 -1.5525 1.5383 17 1 9.4834 -3.3268 0.4450 18 6 4.4241 -1.4897 0.7784 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 1.7501 -1.6649 -1.1909 23 1 1.6961 -0.2350 -2.0385 24 1 1.6054 -0.2617 2.1370 25 1 1.7516 -1.7715 1.2056 26 1 3.8495 1.2509 2.4636 27 1 8.9342 0.4752 1.9720 28 1 4.1799 -2.3877 0.2304 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693518376.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:09 Heat of formation + Delta-G solvation = 44.130639 kcal Electronic energy + Delta-G solvation = -12034.299564 eV Core-core repulsion = 9892.634951 eV Total energy + Delta-G solvation = -2141.664612 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.23960 -37.45237 -35.30588 -32.42319 -31.28664 -29.58842 -27.69976 -25.76857 -22.32315 -21.70554 -20.54026 -18.93062 -17.32384 -16.89369 -16.02567 -15.39836 -15.08840 -14.77790 -14.52144 -13.76161 -13.53816 -13.48694 -13.02993 -12.85289 -12.75627 -12.29545 -12.22236 -11.96903 -11.69901 -11.17455 -10.45855 -9.96655 -9.30842 -8.79199 -8.39252 -6.18063 1.36355 1.39156 1.56024 1.91637 2.18042 2.51093 3.01819 3.16639 3.87699 4.20408 4.35098 4.52507 4.58257 4.65775 4.87143 5.01382 5.08093 5.10335 5.22969 5.34970 5.39504 5.56057 5.95302 6.07155 6.46125 6.56441 6.84252 6.90389 7.63845 7.85687 8.61186 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.074432 B = 0.008603 C = 0.008070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 376.089858 B = 3254.054121 C = 3468.858237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.097 3.903 3 H 0.053 0.947 4 N -0.849 5.849 5 C -0.014 4.014 6 C -0.242 4.242 7 C -0.070 4.070 8 N -0.318 5.318 9 N -0.189 5.189 10 C -0.365 4.365 11 H 0.127 0.873 12 C -0.005 4.005 13 N -0.833 5.833 14 Si 1.014 2.986 15 H -0.266 1.266 16 H -0.275 1.275 17 H -0.249 1.249 18 C -0.038 4.038 19 H 0.061 0.939 20 H 0.064 0.936 21 H 0.058 0.942 22 H 0.342 0.658 23 H 0.341 0.659 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.165 0.835 27 H 0.272 0.728 28 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.849 -3.145 -3.936 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.014 4.014 3 H 0.072 0.928 4 N -0.380 5.380 5 C -0.053 4.053 6 C -0.255 4.255 7 C -0.246 4.246 8 N -0.148 5.148 9 N 0.042 4.958 10 C -0.496 4.496 11 H 0.144 0.856 12 C -0.215 4.215 13 N -0.462 5.462 14 Si 0.833 3.167 15 H -0.191 1.191 16 H -0.200 1.200 17 H -0.172 1.172 18 C -0.186 4.186 19 H 0.080 0.920 20 H 0.083 0.917 21 H 0.077 0.923 22 H 0.155 0.845 23 H 0.154 0.846 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.182 0.818 27 H 0.082 0.918 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.736 -2.414 -3.328 8.761 hybrid contribution -1.005 -0.385 -0.436 1.161 sum -8.742 -2.799 -3.764 9.921 Atomic orbital electron populations 1.22548 0.96014 1.02366 1.02495 1.21337 0.92293 0.97289 0.90524 0.92843 1.58683 1.68520 1.06721 1.04067 1.19761 0.88829 0.99935 0.96782 1.19606 0.96217 0.98535 1.11161 1.23875 0.92057 1.02015 1.06626 1.77989 1.17873 1.01637 1.17299 1.45028 1.04945 1.14193 1.31665 1.20428 0.81957 1.09645 1.37524 0.85552 1.26741 1.03816 0.96003 0.94989 1.70386 1.28073 1.16980 1.30720 0.84676 0.74678 0.79153 0.78172 1.19061 1.19972 1.17185 1.22267 0.84384 1.03125 1.08857 0.91974 0.91677 0.92254 0.84507 0.84622 0.91159 0.91780 0.81765 0.91798 0.82391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 9.48 71.98 0.68 -2.86 15 2 C 0.10 2.76 3.36 44.92 0.15 2.91 15 3 H 0.05 1.76 8.14 -2.39 -0.02 1.74 15 4 N -0.85 -23.92 8.89 -168.67 -1.50 -25.42 15 5 C -0.01 -0.46 5.31 29.85 0.16 -0.30 15 6 C -0.24 -10.88 5.10 -20.10 -0.10 -10.98 15 7 C -0.07 -3.59 11.96 85.29 1.02 -2.57 15 8 N -0.32 -19.29 10.42 -56.80 -0.59 -19.88 15 9 N -0.19 -11.06 3.73 -190.43 -0.71 -11.77 15 10 C -0.37 -20.80 10.26 84.00 0.86 -19.94 15 11 H 0.13 6.47 7.83 -2.91 -0.02 6.45 15 12 C -0.01 -0.30 5.50 84.95 0.47 0.17 15 13 N -0.83 -49.93 11.82 21.66 0.26 -49.67 15 14 Si 1.01 41.10 29.55 68.60 2.03 43.13 15 15 H -0.27 -10.39 7.11 99.48 0.71 -9.68 15 16 H -0.27 -10.86 7.11 99.48 0.71 -10.16 15 17 H -0.25 -9.28 7.11 99.48 0.71 -8.57 15 18 C -0.04 -1.88 11.29 83.31 0.94 -0.94 15 19 H 0.06 1.13 8.14 -2.39 -0.02 1.11 15 20 H 0.06 1.24 8.14 -2.39 -0.02 1.22 15 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 15 22 H 0.34 8.40 8.98 -89.69 -0.81 7.59 15 23 H 0.34 8.15 9.04 -89.69 -0.81 7.34 15 24 H 0.07 2.09 8.14 -2.38 -0.02 2.07 15 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 15 26 H 0.17 7.36 8.06 -2.91 -0.02 7.34 15 27 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 28 H 0.16 6.87 8.06 -2.91 -0.02 6.85 15 Total: -1.00 -70.85 247.11 3.21 -67.65 By element: Atomic # 1 Polarization: 30.93 SS G_CDS: -0.45 Total: 30.48 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 4.18 Total: -34.52 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -2.55 Total: -106.74 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -70.85 3.21 -67.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693518376.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.777 kcal (2) G-P(sol) polarization free energy of solvation -70.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds