Wall clock time and date at job start Mon Mar 30 2020 02:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00254 * 2 1 4 4 H 1.48495 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47020 * 299.99779 * 3 2 1 6 6 H 1.48500 * 109.47083 * 59.99596 * 3 2 1 7 7 C 1.38816 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99841 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99573 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47010 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.23435 * 54.48354 * 11 10 9 13 13 C 1.52870 * 109.26463 * 294.99583 * 11 10 9 14 14 C 1.53301 * 108.73870 * 184.75415 * 13 11 10 15 15 C 1.53191 * 108.42152 * 74.30400 * 14 13 11 16 16 C 1.52713 * 110.27282 * 305.66249 * 15 14 13 17 17 H 1.08991 * 115.38651 * 231.16367 * 16 15 14 18 18 C 1.53660 * 116.02921 * 90.15995 * 16 15 14 19 19 C 1.52071 * 120.52156 * 21.43171 * 16 15 14 20 20 H 1.09001 * 115.92241 * 209.99028 * 19 16 15 21 21 H 0.97006 * 120.00230 * 0.02562 * 1 2 3 22 22 H 0.96992 * 120.00388 * 0.02562 * 9 7 2 23 23 H 1.09000 * 109.47595 * 59.99683 * 10 9 7 24 24 H 1.09005 * 109.47113 * 300.00131 * 10 9 7 25 25 H 1.09002 * 109.61958 * 304.57673 * 13 11 10 26 26 H 1.08998 * 109.61605 * 64.93706 * 13 11 10 27 27 H 1.09001 * 109.62305 * 194.26379 * 14 13 11 28 28 H 1.09004 * 109.61786 * 314.80773 * 14 13 11 29 29 H 1.08994 * 109.33227 * 185.39502 * 15 14 13 30 30 H 1.09006 * 109.14959 * 65.81473 * 15 14 13 31 31 H 1.08993 * 117.53624 * 140.93449 * 18 16 15 32 32 H 1.09005 * 117.53287 * 355.68589 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0636 -4.8197 0.0008 12 1 0.3768 -4.7043 -0.8377 13 6 0.2708 -4.8065 1.3078 14 6 -0.6355 -6.0423 1.3466 15 6 0.2335 -7.2711 1.6325 16 6 1.3715 -7.3620 0.6181 17 1 1.4784 -8.3260 0.1210 18 6 2.6758 -6.6461 1.0021 19 6 1.8228 -6.1288 -0.1488 20 1 2.2267 -6.3087 -1.1451 21 1 -0.4851 0.8401 -0.0004 22 1 0.3555 -2.3880 -0.0002 23 1 2.6839 -3.7142 0.8921 24 1 2.6853 -3.7150 -0.8878 25 1 0.9585 -4.8303 2.1532 26 1 -0.3386 -3.9041 1.3570 27 1 -1.3814 -5.9247 2.1326 28 1 -1.1311 -6.1631 0.3833 29 1 -0.3801 -8.1697 1.5685 30 1 0.6501 -7.1887 2.6364 31 1 3.6144 -7.1401 0.7513 32 1 2.6799 -6.0675 1.9259 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694658396.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:37 Heat of formation + Delta-G solvation = 13.241425 kcal Electronic energy + Delta-G solvation = -12421.891854 eV Core-core repulsion = 10382.428128 eV Total energy + Delta-G solvation = -2039.463726 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.46616 -34.80594 -32.69175 -31.84180 -29.45348 -25.68619 -23.74832 -22.23954 -22.00646 -20.03532 -18.15065 -16.97786 -16.00985 -14.65639 -14.17851 -13.95140 -13.63252 -13.11604 -12.98689 -12.62965 -12.26203 -11.64483 -11.29215 -11.09998 -10.85504 -10.80899 -10.57790 -10.24872 -10.03398 -9.96735 -9.65002 -9.47171 -9.23347 -8.80987 -6.84170 -5.71197 -2.98766 3.46535 3.51993 3.54415 3.95534 4.64117 4.81986 4.98194 5.07330 5.21644 5.39808 5.53718 5.60417 5.62811 5.74112 5.88146 5.96946 6.00949 6.12198 6.14609 6.27489 6.34876 6.41133 6.47765 6.55553 6.66577 6.82992 6.95162 7.05469 7.75979 8.48426 9.59269 10.19199 10.54084 11.52043 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.068065 B = 0.007989 C = 0.007450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.275206 B = 3504.165898 C = 3757.597335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.161 3.839 11 C -0.063 4.063 12 H 0.073 0.927 13 C -0.111 4.111 14 C -0.120 4.120 15 C -0.086 4.086 16 C -0.152 4.152 17 H 0.095 0.905 18 C -0.184 4.184 19 C -0.123 4.123 20 H 0.094 0.906 21 H 0.254 0.746 22 H 0.383 0.617 23 H 0.018 0.982 24 H 0.016 0.984 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.192 -13.907 2.034 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.377 5.377 10 C 0.034 3.966 11 C -0.082 4.082 12 H 0.091 0.909 13 C -0.149 4.149 14 C -0.158 4.158 15 C -0.124 4.124 16 C -0.170 4.170 17 H 0.113 0.887 18 C -0.221 4.221 19 C -0.142 4.142 20 H 0.112 0.888 21 H 0.063 0.937 22 H 0.217 0.783 23 H 0.036 0.964 24 H 0.034 0.966 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.105 0.895 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.347 -13.789 2.037 14.004 hybrid contribution 0.266 0.923 -0.063 0.963 sum 1.613 -12.866 1.974 13.116 Atomic orbital electron populations 1.69671 1.05077 1.25403 1.58230 1.24732 0.95529 0.97631 1.03335 0.86122 0.78780 0.84218 0.77146 1.20606 1.21922 1.21921 1.19302 0.91070 0.84273 1.42026 0.91219 1.42407 1.05881 1.00028 1.89387 1.20630 0.93164 0.85202 0.97652 1.20628 0.96983 0.92398 0.98183 0.90886 1.21591 0.98249 0.97728 0.97318 1.21657 0.97643 0.94983 1.01473 1.21069 0.95581 0.98161 0.97560 1.22200 0.96270 0.96238 1.02299 0.88680 1.23092 0.94228 1.04280 1.00492 1.21771 1.01820 0.94259 0.96301 0.88799 0.93651 0.78270 0.96381 0.96587 0.92260 0.90797 0.92228 0.91946 0.92258 0.92026 0.89494 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.82 13.06 55.49 0.72 -28.10 16 2 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.86 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.21 5.36 -59.90 -0.32 -19.53 16 10 C 0.16 3.42 5.57 -4.04 -0.02 3.40 16 11 C -0.06 -1.09 2.29 -91.16 -0.21 -1.30 16 12 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.11 -1.85 4.77 -26.64 -0.13 -1.98 16 14 C -0.12 -1.63 5.96 -26.48 -0.16 -1.79 16 15 C -0.09 -1.04 5.84 -26.78 -0.16 -1.20 16 16 C -0.15 -1.90 6.19 -90.90 -0.56 -2.46 16 17 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 18 C -0.18 -2.43 9.60 -26.74 -0.26 -2.68 16 19 C -0.12 -1.78 5.29 -91.92 -0.49 -2.27 16 20 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 21 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 22 H 0.38 10.46 6.87 -40.82 -0.28 10.18 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 1.00 7.11 -51.93 -0.37 0.63 16 26 H 0.07 1.40 7.30 -51.93 -0.38 1.02 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.73 8.06 -51.93 -0.42 0.31 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.32 7.26 -51.93 -0.38 0.95 16 LS Contribution 256.19 15.07 3.86 3.86 Total: -1.00 -30.31 256.19 -8.15 -38.46 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.17 Total: 5.27 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -2.22 Total: -17.82 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: 0.40 Total: -47.63 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.31 -8.15 -38.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694658396.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.706 kcal (2) G-P(sol) polarization free energy of solvation -30.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds