Wall clock time and date at job start Mon Mar 30 2020 02:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00254 * 2 1 4 4 H 1.48495 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47020 * 299.99779 * 3 2 1 6 6 H 1.48500 * 109.47083 * 59.99596 * 3 2 1 7 7 C 1.38816 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99841 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99573 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47010 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.23435 * 54.48354 * 11 10 9 13 13 C 1.52870 * 109.26463 * 294.99583 * 11 10 9 14 14 C 1.53301 * 108.73870 * 184.75415 * 13 11 10 15 15 C 1.53191 * 108.42152 * 74.30400 * 14 13 11 16 16 C 1.52713 * 110.27282 * 305.66249 * 15 14 13 17 17 H 1.08991 * 115.38651 * 231.16367 * 16 15 14 18 18 C 1.53660 * 116.02921 * 90.15995 * 16 15 14 19 19 C 1.52071 * 120.52156 * 21.43171 * 16 15 14 20 20 H 1.09001 * 115.92241 * 209.99028 * 19 16 15 21 21 H 0.97006 * 120.00230 * 0.02562 * 1 2 3 22 22 H 0.96992 * 120.00388 * 0.02562 * 9 7 2 23 23 H 1.09000 * 109.47595 * 59.99683 * 10 9 7 24 24 H 1.09005 * 109.47113 * 300.00131 * 10 9 7 25 25 H 1.09002 * 109.61958 * 304.57673 * 13 11 10 26 26 H 1.08998 * 109.61605 * 64.93706 * 13 11 10 27 27 H 1.09001 * 109.62305 * 194.26379 * 14 13 11 28 28 H 1.09004 * 109.61786 * 314.80773 * 14 13 11 29 29 H 1.08994 * 109.33227 * 185.39502 * 15 14 13 30 30 H 1.09006 * 109.14959 * 65.81473 * 15 14 13 31 31 H 1.08993 * 117.53624 * 140.93449 * 18 16 15 32 32 H 1.09005 * 117.53287 * 355.68589 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0636 -4.8197 0.0008 12 1 0.3768 -4.7043 -0.8377 13 6 0.2708 -4.8065 1.3078 14 6 -0.6355 -6.0423 1.3466 15 6 0.2335 -7.2711 1.6325 16 6 1.3715 -7.3620 0.6181 17 1 1.4784 -8.3260 0.1210 18 6 2.6758 -6.6461 1.0021 19 6 1.8228 -6.1288 -0.1488 20 1 2.2267 -6.3087 -1.1451 21 1 -0.4851 0.8401 -0.0004 22 1 0.3555 -2.3880 -0.0002 23 1 2.6839 -3.7142 0.8921 24 1 2.6853 -3.7150 -0.8878 25 1 0.9585 -4.8303 2.1532 26 1 -0.3386 -3.9041 1.3570 27 1 -1.3814 -5.9247 2.1326 28 1 -1.1311 -6.1631 0.3833 29 1 -0.3801 -8.1697 1.5685 30 1 0.6501 -7.1887 2.6364 31 1 3.6144 -7.1401 0.7513 32 1 2.6799 -6.0675 1.9259 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694658396.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:37 Heat of formation + Delta-G solvation = -4.479715 kcal Electronic energy + Delta-G solvation = -12422.660300 eV Core-core repulsion = 10382.428128 eV Total energy + Delta-G solvation = -2040.232172 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 195.132 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.65571 -36.67288 -34.10603 -33.47712 -31.21979 -27.28723 -25.48151 -23.63310 -23.38737 -21.27856 -19.63699 -18.84172 -17.17858 -16.67678 -15.58499 -15.42613 -15.30964 -14.66739 -14.36295 -14.06983 -13.70805 -13.19443 -12.86148 -12.69124 -12.63602 -12.20218 -12.08068 -11.88006 -11.74386 -11.54245 -11.11587 -10.91152 -10.57925 -10.48668 -9.00583 -7.96457 -5.25398 1.45763 1.47139 1.57442 2.54515 2.88504 3.36573 3.68692 3.84686 3.89075 4.05486 4.21942 4.30052 4.39750 4.48888 4.61074 4.70535 4.78499 4.84525 4.97636 5.00110 5.07583 5.12075 5.28771 5.34487 5.40091 5.46108 5.46947 5.51874 5.58446 6.26223 7.31958 8.08403 8.32925 9.27459 Molecular weight = 195.13amu Principal moments of inertia in cm(-1) A = 0.068065 B = 0.007989 C = 0.007450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.275206 B = 3504.165898 C = 3757.597335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.073 0.927 9 N -0.745 5.745 10 C 0.161 3.839 11 C -0.053 4.053 12 H 0.060 0.940 13 C -0.108 4.108 14 C -0.115 4.115 15 C -0.086 4.086 16 C -0.134 4.134 17 H 0.120 0.880 18 C -0.182 4.182 19 C -0.143 4.143 20 H 0.101 0.899 21 H 0.252 0.748 22 H 0.374 0.626 23 H 0.015 0.985 24 H 0.014 0.986 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.934 -15.358 2.235 15.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.091 0.909 9 N -0.388 5.388 10 C 0.035 3.965 11 C -0.072 4.072 12 H 0.079 0.921 13 C -0.146 4.146 14 C -0.153 4.153 15 C -0.123 4.123 16 C -0.152 4.152 17 H 0.137 0.863 18 C -0.219 4.219 19 C -0.161 4.161 20 H 0.119 0.881 21 H 0.061 0.939 22 H 0.206 0.794 23 H 0.033 0.967 24 H 0.032 0.968 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.118 -15.273 2.239 15.581 hybrid contribution 0.049 1.348 -0.121 1.354 sum 2.166 -13.925 2.118 14.251 Atomic orbital electron populations 1.69831 1.06629 1.26057 1.59532 1.25603 0.96475 1.01171 1.03634 0.85037 0.78140 0.79558 0.76803 1.19129 1.21810 1.21817 1.19696 0.91479 0.85520 1.41257 0.90883 1.42612 1.05657 1.01182 1.89300 1.20769 0.93832 0.84878 0.97043 1.20461 0.96094 0.92583 0.98031 0.92138 1.21514 0.98219 0.98082 0.96763 1.21623 0.97516 0.94128 1.01988 1.21114 0.95470 0.98114 0.97609 1.22340 0.95727 0.95988 1.01153 0.86251 1.23150 0.95533 1.04126 0.99123 1.21668 1.03292 0.93732 0.97434 0.88083 0.93937 0.79361 0.96657 0.96847 0.92704 0.94122 0.91201 0.91901 0.89707 0.91619 0.87704 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.93 13.06 21.65 0.28 -60.65 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 3 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 7 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -40.06 5.36 -343.43 -1.84 -41.90 16 10 C 0.16 6.96 5.57 86.38 0.48 7.44 16 11 C -0.05 -1.84 2.29 -11.14 -0.03 -1.86 16 12 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 13 C -0.11 -3.62 4.77 30.65 0.15 -3.48 16 14 C -0.12 -2.95 5.96 30.76 0.18 -2.77 16 15 C -0.09 -1.80 5.84 30.56 0.18 -1.62 16 16 C -0.13 -2.92 6.19 -10.97 -0.07 -2.99 16 17 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 18 C -0.18 -4.39 9.60 30.59 0.29 -4.09 16 19 C -0.14 -3.90 5.29 -11.64 -0.06 -3.96 16 20 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 21 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 22 H 0.37 21.22 6.87 -92.71 -0.64 20.58 16 23 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 25 H 0.05 1.85 7.11 -2.39 -0.02 1.83 16 26 H 0.04 1.60 7.30 -2.39 -0.02 1.59 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.61 8.05 -2.39 -0.02 1.59 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.36 8.06 -2.38 -0.02 1.34 16 31 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.08 2.20 7.26 -2.38 -0.02 2.19 16 Total: -1.00 -64.74 256.19 3.35 -61.40 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.44 Total: 22.88 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 2.43 Total: -31.08 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -1.56 Total: -102.55 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -64.74 3.35 -61.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694658396.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.916 kcal (2) G-P(sol) polarization free energy of solvation -64.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds