Wall clock time and date at job start Mon Mar 30 2020 02:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46705 * 2 1 4 4 C 1.53001 * 109.46470 * 240.00678 * 2 1 3 5 5 C 1.50697 * 109.47563 * 64.99997 * 4 2 1 6 6 H 1.08000 * 119.99559 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00201 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99812 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99950 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47188 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47118 * 120.00308 * 9 7 5 12 12 H 1.48504 * 109.47146 * 240.00318 * 9 7 5 13 13 N 1.46500 * 109.47547 * 120.00812 * 2 1 3 14 14 C 1.35960 * 126.07109 * 34.99470 * 13 2 1 15 15 C 1.35701 * 107.55258 * 179.97438 * 14 13 2 16 16 N 1.40805 * 126.06876 * 179.97438 * 15 14 13 17 17 C 1.40216 * 107.86408 * 0.26614 * 15 14 13 18 18 N 1.30862 * 108.36321 * 359.55269 * 17 15 14 19 19 H 1.08996 * 109.47083 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46394 * 299.99019 * 1 2 3 21 21 H 1.08997 * 109.47694 * 59.99426 * 1 2 3 22 22 H 1.09000 * 109.46793 * 184.99976 * 4 2 1 23 23 H 1.08996 * 109.47263 * 304.99467 * 4 2 1 24 24 H 0.97010 * 119.99816 * 180.02562 * 8 7 5 25 25 H 1.08007 * 126.22561 * 359.97438 * 14 13 2 26 26 H 0.96999 * 119.99976 * 0.02562 * 16 15 14 27 27 H 0.97005 * 119.99915 * 179.97438 * 16 15 14 28 28 H 1.08008 * 125.82048 * 179.73576 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0572 -2.4766 6 1 1.0799 0.9744 -2.3756 7 6 1.9930 -0.4014 -3.7284 8 7 2.6761 -1.5185 -3.8513 9 14 1.4981 0.5631 -5.2497 10 1 0.7409 1.7742 -4.8433 11 1 2.7159 0.9687 -5.9965 12 1 0.6446 -0.2865 -6.1186 13 7 2.0185 -0.6908 1.1960 14 6 1.4366 -1.7641 1.7943 15 6 2.1988 -2.0982 2.8662 16 7 1.9511 -3.1558 3.7622 17 6 3.2732 -1.1993 2.9270 18 7 3.1681 -0.3630 1.9260 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3632 0.5137 0.8902 21 1 -0.3634 0.5139 -0.8899 22 1 3.1262 -0.7994 -1.2058 23 1 1.6053 -1.7197 -1.2953 24 1 2.9239 -1.8410 -4.7321 25 1 0.5322 -2.2605 1.4746 26 1 1.1746 -3.7239 3.6391 27 1 2.5574 -3.3166 4.5021 28 1 4.0559 -1.1991 3.6713 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695819074.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:25 Heat of formation + Delta-G solvation = 66.893065 kcal Electronic energy + Delta-G solvation = -11974.964398 eV Core-core repulsion = 9834.286838 eV Total energy + Delta-G solvation = -2140.677560 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.46965 -35.48545 -33.50175 -32.32171 -29.48376 -27.44667 -27.03253 -23.80541 -21.72532 -20.23183 -19.30404 -16.87496 -16.07008 -15.63609 -14.79170 -14.48896 -14.10144 -13.70767 -13.19894 -12.37617 -12.09277 -11.95147 -11.47431 -11.00782 -10.91606 -10.73122 -10.33876 -10.30849 -9.97606 -9.67078 -9.26381 -8.60763 -8.44729 -6.71089 -6.08424 -4.12950 2.56746 3.20352 3.26974 3.35193 3.38488 3.48241 4.39346 4.46200 5.27357 5.32409 5.44429 5.68164 5.82033 6.00685 6.10019 6.31742 6.49217 6.69864 6.71425 6.95977 7.49109 7.59495 7.69422 7.91705 8.01983 8.18902 8.25519 8.45720 8.92431 9.51380 11.02776 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.066070 B = 0.008092 C = 0.007906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.688975 B = 3459.585374 C = 3540.748687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.159 3.841 3 H 0.090 0.910 4 C 0.019 3.981 5 C -0.521 4.521 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.890 5.890 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.341 5.341 14 C -0.019 4.019 15 C 0.036 3.964 16 N -0.882 5.882 17 C -0.013 4.013 18 N -0.279 5.279 19 H 0.056 0.944 20 H 0.043 0.957 21 H 0.087 0.913 22 H 0.025 0.975 23 H 0.022 0.978 24 H 0.262 0.738 25 H 0.162 0.838 26 H 0.390 0.610 27 H 0.391 0.609 28 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.587 -1.225 10.859 11.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.059 3.941 3 H 0.108 0.892 4 C -0.019 4.019 5 C -0.560 4.560 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.127 5.127 14 C -0.168 4.168 15 C -0.072 4.072 16 N -0.430 5.430 17 C -0.200 4.200 18 N -0.103 5.103 19 H 0.075 0.925 20 H 0.062 0.938 21 H 0.106 0.894 22 H 0.043 0.957 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.179 0.821 26 H 0.217 0.783 27 H 0.218 0.782 28 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.014 -0.165 9.944 10.392 hybrid contribution -0.580 -0.706 -0.282 0.956 sum -3.594 -0.871 9.662 10.345 Atomic orbital electron populations 1.22046 0.94005 1.02332 1.02069 1.21734 0.93936 0.96868 0.81591 0.89223 1.19499 0.97351 0.95874 0.89224 1.21088 1.35847 1.08645 0.90439 0.92069 1.25005 0.94945 0.95033 0.99224 1.69991 1.38230 1.21033 1.23638 0.86483 0.78342 0.80003 0.82867 1.19590 1.20926 1.20958 1.48966 1.17876 1.23469 1.22419 1.21631 1.02172 0.95817 0.97190 1.17665 0.98124 0.95661 0.95753 1.41363 1.32866 1.35618 1.33147 1.23327 1.00229 0.96501 0.99911 1.77169 1.03620 1.23499 1.06017 0.92498 0.93783 0.89386 0.95690 0.95960 0.92860 0.82052 0.78282 0.78170 0.81205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.65 37.16 0.32 -2.29 15 2 C 0.16 3.37 3.35 -67.93 -0.23 3.14 15 3 H 0.09 1.93 8.14 -51.93 -0.42 1.51 15 4 C 0.02 0.48 4.77 -27.88 -0.13 0.35 15 5 C -0.52 -14.18 8.41 -34.44 -0.29 -14.47 15 6 H 0.06 1.58 7.06 -52.49 -0.37 1.21 15 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 15 8 N -0.89 -26.55 13.29 55.43 0.74 -25.81 15 9 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 15 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 13 N -0.34 -6.98 3.55 -54.50 -0.19 -7.18 15 14 C -0.02 -0.34 10.66 -16.63 -0.18 -0.51 15 15 C 0.04 0.59 7.26 -83.90 -0.61 -0.02 15 16 N -0.88 -10.63 9.20 32.29 0.30 -10.33 15 17 C -0.01 -0.23 12.03 -17.22 -0.21 -0.44 15 18 N -0.28 -5.76 12.57 30.70 0.39 -5.37 15 19 H 0.06 0.97 7.17 -51.93 -0.37 0.60 15 20 H 0.04 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.09 1.59 6.95 -51.93 -0.36 1.23 15 22 H 0.02 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.02 0.61 8.14 -51.93 -0.42 0.18 15 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 15 25 H 0.16 2.54 7.29 -52.48 -0.38 2.16 15 26 H 0.39 4.02 8.96 -40.82 -0.37 3.65 15 27 H 0.39 3.83 8.96 -40.82 -0.37 3.46 15 28 H 0.17 2.30 8.06 -52.48 -0.42 1.88 15 LS Contribution 245.37 15.07 3.70 3.70 Total: -1.00 -31.40 245.37 -4.98 -36.38 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -3.47 Total: 5.13 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -1.42 Total: -12.64 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 1.23 Total: -48.70 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.40 -4.98 -36.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819074.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.272 kcal (2) G-P(sol) polarization free energy of solvation -31.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds