Wall clock time and date at job start Mon Mar 30 2020 02:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46705 * 2 1 4 4 C 1.53001 * 109.46470 * 240.00678 * 2 1 3 5 5 C 1.50697 * 109.47563 * 64.99997 * 4 2 1 6 6 H 1.08000 * 119.99559 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00201 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99812 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99950 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47188 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47118 * 120.00308 * 9 7 5 12 12 H 1.48504 * 109.47146 * 240.00318 * 9 7 5 13 13 N 1.46500 * 109.47547 * 120.00812 * 2 1 3 14 14 C 1.35960 * 126.07109 * 34.99470 * 13 2 1 15 15 C 1.35701 * 107.55258 * 179.97438 * 14 13 2 16 16 N 1.40805 * 126.06876 * 179.97438 * 15 14 13 17 17 C 1.40216 * 107.86408 * 0.26614 * 15 14 13 18 18 N 1.30862 * 108.36321 * 359.55269 * 17 15 14 19 19 H 1.08996 * 109.47083 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46394 * 299.99019 * 1 2 3 21 21 H 1.08997 * 109.47694 * 59.99426 * 1 2 3 22 22 H 1.09000 * 109.46793 * 184.99976 * 4 2 1 23 23 H 1.08996 * 109.47263 * 304.99467 * 4 2 1 24 24 H 0.97010 * 119.99816 * 180.02562 * 8 7 5 25 25 H 1.08007 * 126.22561 * 359.97438 * 14 13 2 26 26 H 0.96999 * 119.99976 * 0.02562 * 16 15 14 27 27 H 0.97005 * 119.99915 * 179.97438 * 16 15 14 28 28 H 1.08008 * 125.82048 * 179.73576 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6412 0.0572 -2.4766 6 1 1.0799 0.9744 -2.3756 7 6 1.9930 -0.4014 -3.7284 8 7 2.6761 -1.5185 -3.8513 9 14 1.4981 0.5631 -5.2497 10 1 0.7409 1.7742 -4.8433 11 1 2.7159 0.9687 -5.9965 12 1 0.6446 -0.2865 -6.1186 13 7 2.0185 -0.6908 1.1960 14 6 1.4366 -1.7641 1.7943 15 6 2.1988 -2.0982 2.8662 16 7 1.9511 -3.1558 3.7622 17 6 3.2732 -1.1993 2.9270 18 7 3.1681 -0.3630 1.9260 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3632 0.5137 0.8902 21 1 -0.3634 0.5139 -0.8899 22 1 3.1262 -0.7994 -1.2058 23 1 1.6053 -1.7197 -1.2953 24 1 2.9239 -1.8410 -4.7321 25 1 0.5322 -2.2605 1.4746 26 1 1.1746 -3.7239 3.6391 27 1 2.5574 -3.3166 4.5021 28 1 4.0559 -1.1991 3.6713 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695819074.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:24 Heat of formation + Delta-G solvation = 44.481029 kcal Electronic energy + Delta-G solvation = -11975.936257 eV Core-core repulsion = 9834.286838 eV Total energy + Delta-G solvation = -2141.649418 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.88147 -37.16043 -34.94959 -34.14430 -31.08640 -28.95635 -28.68577 -25.66599 -23.37684 -21.60729 -20.84332 -18.73896 -17.73046 -16.73171 -16.64483 -15.92775 -15.67988 -15.20552 -14.83372 -14.26411 -13.75553 -13.42143 -13.05947 -12.82929 -12.73362 -12.36277 -12.03073 -11.92308 -11.53941 -11.34126 -11.25048 -10.61525 -10.15027 -8.23827 -7.94747 -6.35344 1.13273 1.41785 1.42751 1.55792 1.76407 2.15964 2.41445 3.11732 3.35777 3.87436 4.13962 4.24615 4.30064 4.45367 4.74479 4.90905 4.96597 5.04216 5.25612 5.38069 5.47557 5.70471 5.74629 6.05424 6.34645 6.79880 6.87546 6.95150 7.34527 7.39137 8.89937 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.066070 B = 0.008092 C = 0.007906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.688975 B = 3459.585374 C = 3540.748687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.169 3.831 3 H 0.080 0.920 4 C 0.031 3.969 5 C -0.532 4.532 6 H 0.076 0.924 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.970 3.030 10 H -0.255 1.255 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.363 5.363 14 C -0.038 4.038 15 C 0.045 3.955 16 N -0.866 5.866 17 C -0.008 4.008 18 N -0.324 5.324 19 H 0.062 0.938 20 H 0.069 0.931 21 H 0.085 0.915 22 H -0.023 1.023 23 H -0.002 1.002 24 H 0.264 0.736 25 H 0.179 0.821 26 H 0.402 0.598 27 H 0.405 0.595 28 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.706 -0.931 11.701 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.067 3.933 3 H 0.099 0.901 4 C -0.007 4.007 5 C -0.570 4.570 6 H 0.094 0.906 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.794 3.206 10 H -0.178 1.178 11 H -0.209 1.209 12 H -0.203 1.203 13 N -0.150 5.150 14 C -0.187 4.187 15 C -0.064 4.064 16 N -0.416 5.416 17 C -0.195 4.195 18 N -0.148 5.148 19 H 0.081 0.919 20 H 0.088 0.912 21 H 0.103 0.897 22 H -0.004 1.004 23 H 0.016 0.984 24 H 0.072 0.928 25 H 0.196 0.804 26 H 0.230 0.770 27 H 0.235 0.765 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.148 0.109 10.833 11.601 hybrid contribution -0.159 -0.887 -0.413 0.991 sum -4.307 -0.779 10.420 11.302 Atomic orbital electron populations 1.21940 0.91137 1.03083 1.03112 1.21389 0.96012 0.95540 0.80311 0.90145 1.19280 0.94175 0.95275 0.91999 1.21515 1.35465 1.09037 0.91028 0.90619 1.26009 0.94796 0.95974 1.02943 1.70141 1.39789 1.23062 1.24544 0.85319 0.77999 0.78923 0.78326 1.17802 1.20943 1.20333 1.48793 1.18635 1.24844 1.22751 1.22054 1.03214 0.95631 0.97779 1.17789 0.97122 0.95943 0.95560 1.41333 1.33513 1.34238 1.32502 1.23971 1.00836 0.95410 0.99304 1.77104 1.04462 1.25625 1.07594 0.91899 0.91238 0.89674 1.00426 0.98393 0.92761 0.80353 0.76966 0.76524 0.77795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 8.65 71.98 0.62 -4.02 15 2 C 0.17 7.25 3.35 44.99 0.15 7.40 15 3 H 0.08 3.54 8.14 -2.39 -0.02 3.52 15 4 C 0.03 1.66 4.77 29.85 0.14 1.80 15 5 C -0.53 -29.28 8.41 25.60 0.22 -29.07 15 6 H 0.08 3.86 7.06 -2.91 -0.02 3.84 15 7 C 0.00 0.04 5.46 84.66 0.46 0.51 15 8 N -0.94 -57.18 13.29 21.45 0.28 -56.90 15 9 Si 0.97 43.36 29.54 68.60 2.03 45.39 15 10 H -0.25 -10.59 7.11 99.48 0.71 -9.88 15 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 12 H -0.28 -12.08 7.11 99.48 0.71 -11.37 15 13 N -0.36 -14.92 3.55 -326.34 -1.16 -16.08 15 14 C -0.04 -1.34 10.66 83.47 0.89 -0.45 15 15 C 0.05 1.39 7.26 37.59 0.27 1.67 15 16 N -0.87 -18.29 9.20 -51.74 -0.48 -18.77 15 17 C -0.01 -0.27 12.03 85.32 1.03 0.75 15 18 N -0.32 -13.38 12.57 -56.77 -0.71 -14.10 15 19 H 0.06 2.07 7.17 -2.39 -0.02 2.05 15 20 H 0.07 2.04 8.14 -2.38 -0.02 2.02 15 21 H 0.08 2.97 6.95 -2.39 -0.02 2.95 15 22 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 15 23 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 15 24 H 0.26 15.11 8.31 -92.70 -0.77 14.34 15 25 H 0.18 5.37 7.29 -2.91 -0.02 5.35 15 26 H 0.40 7.04 8.96 -92.71 -0.83 6.21 15 27 H 0.41 6.55 8.96 -92.70 -0.83 5.72 15 28 H 0.21 4.98 8.06 -2.91 -0.02 4.95 15 Total: -1.00 -68.90 245.37 3.26 -65.64 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -0.49 Total: 16.22 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 3.78 Total: -21.41 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -2.06 Total: -105.84 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -68.90 3.26 -65.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819074.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.120 kcal (2) G-P(sol) polarization free energy of solvation -68.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds