Wall clock time and date at job start Mon Mar 30 2020 02:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47527 * 2 1 4 4 C 1.53002 * 109.46918 * 120.00126 * 2 1 3 5 5 C 1.50696 * 109.46919 * 294.99716 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47035 * 60.00183 * 9 7 5 11 11 H 1.48503 * 109.46845 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47237 * 299.99939 * 9 7 5 13 13 N 1.46504 * 109.47132 * 240.00060 * 2 1 3 14 14 C 1.35974 * 126.06765 * 325.00472 * 13 2 1 15 15 C 1.35702 * 107.54961 * 179.97438 * 14 13 2 16 16 N 1.40796 * 126.06801 * 180.02562 * 15 14 13 17 17 C 1.40228 * 107.86548 * 359.97438 * 15 14 13 18 18 N 1.30861 * 108.36325 * 359.75280 * 17 15 14 19 19 H 1.08994 * 109.47199 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47048 * 300.00084 * 1 2 3 21 21 H 1.09001 * 109.46743 * 59.99815 * 1 2 3 22 22 H 1.09000 * 109.46497 * 174.99981 * 4 2 1 23 23 H 1.08999 * 109.46623 * 55.00045 * 4 2 1 24 24 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 25 25 H 1.07993 * 126.22253 * 359.95568 * 14 13 2 26 26 H 0.97003 * 119.99617 * 0.02562 * 16 15 14 27 27 H 0.97002 * 120.00064 * 179.97438 * 16 15 14 28 28 H 1.07996 * 125.81712 * 180.02562 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6413 0.0570 2.4765 6 1 1.0807 0.9746 2.3756 7 6 1.9932 -0.4018 3.7283 8 7 2.6815 -1.5157 3.8507 9 14 1.4997 0.5634 5.2496 10 1 0.0197 0.6701 5.3095 11 1 1.9946 -0.1368 6.4621 12 1 2.0919 1.9238 5.1865 13 7 2.0184 -0.6906 -1.1962 14 6 1.4363 -1.7639 -1.7946 15 6 2.1978 -2.0973 -2.8672 16 7 1.9498 -3.1544 -3.7635 17 6 3.2749 -1.2013 -2.9252 18 7 3.1640 -0.3583 -1.9305 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 3.1263 -0.7995 1.2055 23 1 1.6053 -1.7198 1.2950 24 1 2.9380 -2.0168 3.0608 25 1 0.5326 -2.2609 -1.4743 26 1 1.1731 -3.7224 -3.6405 27 1 2.5551 -3.3142 -4.5045 28 1 4.0597 -1.2036 -3.6672 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695819077.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:27 Heat of formation + Delta-G solvation = 40.181492 kcal Electronic energy + Delta-G solvation = -12009.582549 eV Core-core repulsion = 9867.746689 eV Total energy + Delta-G solvation = -2141.835860 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 195.107 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.96849 -37.38469 -35.12215 -34.21835 -31.04157 -28.84252 -28.60165 -25.61074 -23.56490 -21.69871 -21.03158 -18.96008 -18.09973 -16.76947 -16.15361 -15.92369 -15.61017 -15.56733 -15.02846 -14.26844 -13.88664 -13.53195 -13.17817 -12.98487 -12.60313 -12.16537 -12.11730 -11.92420 -11.62692 -11.39330 -10.86683 -10.58155 -10.23819 -8.72316 -8.02617 -6.43984 1.04563 1.54038 1.63255 1.66871 1.81703 2.08523 2.57648 3.13895 3.29041 3.76747 4.04360 4.10932 4.22007 4.31598 4.64913 4.77806 4.85538 4.91859 5.11064 5.12942 5.28606 5.64156 5.81950 6.11856 6.23529 6.48428 6.80899 6.87181 7.33427 7.39452 8.67933 Molecular weight = 195.11amu Principal moments of inertia in cm(-1) A = 0.066382 B = 0.008128 C = 0.007944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.697329 B = 3443.905294 C = 3523.689941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.176 3.824 3 H 0.079 0.921 4 C 0.016 3.984 5 C -0.608 4.608 6 H 0.067 0.933 7 C -0.038 4.038 8 N -0.937 5.937 9 Si 1.121 2.879 10 H -0.261 1.261 11 H -0.288 1.288 12 H -0.269 1.269 13 N -0.366 5.366 14 C -0.040 4.040 15 C 0.048 3.952 16 N -0.865 5.865 17 C -0.006 4.006 18 N -0.324 5.324 19 H 0.062 0.938 20 H 0.084 0.916 21 H 0.071 0.929 22 H -0.026 1.026 23 H -0.006 1.006 24 H 0.251 0.749 25 H 0.179 0.821 26 H 0.402 0.598 27 H 0.406 0.594 28 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.965 -0.612 -12.249 13.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.075 3.925 3 H 0.097 0.903 4 C -0.023 4.023 5 C -0.646 4.646 6 H 0.086 0.914 7 C -0.235 4.235 8 N -0.575 5.575 9 Si 0.941 3.059 10 H -0.185 1.185 11 H -0.214 1.214 12 H -0.194 1.194 13 N -0.154 5.154 14 C -0.189 4.189 15 C -0.061 4.061 16 N -0.415 5.415 17 C -0.193 4.193 18 N -0.148 5.148 19 H 0.081 0.919 20 H 0.102 0.898 21 H 0.090 0.910 22 H -0.008 1.008 23 H 0.013 0.987 24 H 0.060 0.940 25 H 0.196 0.804 26 H 0.231 0.769 27 H 0.236 0.764 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.390 0.550 -9.880 10.826 hybrid contribution -0.053 -1.303 -2.210 2.566 sum -4.443 -0.753 -12.091 12.903 Atomic orbital electron populations 1.21931 0.91008 1.03079 1.03191 1.21217 0.96064 0.95343 0.79913 0.90264 1.19445 0.93781 0.95476 0.93548 1.22282 1.39080 1.10847 0.92374 0.91433 1.27522 0.93558 0.97043 1.05368 1.70920 1.37354 1.16415 1.32762 0.82904 0.77363 0.74339 0.71309 1.18527 1.21352 1.19442 1.48776 1.19119 1.24834 1.22622 1.22053 1.03239 0.95744 0.97828 1.17786 0.96870 0.95990 0.95481 1.41343 1.33577 1.34218 1.32349 1.24005 1.00749 0.95178 0.99396 1.77114 1.04625 1.25338 1.07697 0.91917 0.89773 0.91044 1.00818 0.98745 0.93952 0.80377 0.76915 0.76439 0.77635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.65 71.98 0.62 -4.06 15 2 C 0.18 7.60 3.35 44.99 0.15 7.75 15 3 H 0.08 3.54 8.14 -2.39 -0.02 3.52 15 4 C 0.02 0.83 4.08 29.85 0.12 0.96 15 5 C -0.61 -33.80 8.41 25.60 0.22 -33.58 15 6 H 0.07 3.51 7.06 -2.91 -0.02 3.49 15 7 C -0.04 -2.16 5.46 84.66 0.46 -1.70 15 8 N -0.94 -58.97 13.65 21.45 0.29 -58.67 15 9 Si 1.12 49.27 29.90 68.60 2.05 51.32 15 10 H -0.26 -10.31 7.11 99.48 0.71 -9.60 15 11 H -0.29 -12.86 7.11 99.48 0.71 -12.16 15 12 H -0.27 -11.01 7.11 99.48 0.71 -10.31 15 13 N -0.37 -14.96 3.55 -326.33 -1.16 -16.12 15 14 C -0.04 -1.40 10.66 83.46 0.89 -0.51 15 15 C 0.05 1.46 7.26 37.60 0.27 1.73 15 16 N -0.87 -17.84 9.20 -51.74 -0.48 -18.32 15 17 C -0.01 -0.20 12.03 85.32 1.03 0.83 15 18 N -0.32 -13.28 12.57 -56.77 -0.71 -13.99 15 19 H 0.06 2.08 7.17 -2.39 -0.02 2.06 15 20 H 0.08 3.01 6.95 -2.39 -0.02 2.99 15 21 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 22 H -0.03 -1.62 8.00 -2.39 -0.02 -1.63 15 23 H -0.01 -0.32 8.01 -2.39 -0.02 -0.34 15 24 H 0.25 16.29 7.22 -92.71 -0.67 15.62 15 25 H 0.18 5.31 7.29 -2.91 -0.02 5.29 15 26 H 0.40 6.87 8.96 -92.71 -0.83 6.03 15 27 H 0.41 6.35 8.96 -92.71 -0.83 5.52 15 28 H 0.21 4.91 8.06 -2.91 -0.02 4.88 15 Total: -1.00 -70.25 244.06 3.37 -66.88 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -0.39 Total: 17.49 kcal Atomic # 6 Polarization: -32.34 SS G_CDS: 3.76 Total: -28.58 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -2.06 Total: -107.10 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.05 Total: 51.32 kcal Total: -70.25 3.37 -66.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695819077.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.061 kcal (2) G-P(sol) polarization free energy of solvation -70.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds